From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 26-OCT-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: SPR_RS02340 [old locus tag: spr0456 ]
  • pan locus tag?: PNEUPAN001408000
  • symbol: dnaJ
  • pan gene symbol?: dnaJ
  • synonym:
  • product: molecular chaperone DnaJ

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPR_RS02340 [old locus tag: spr0456 ]
  • symbol: dnaJ
  • product: molecular chaperone DnaJ
  • replicon: chromosome
  • strand: +
  • coordinates: 464641..465759
  • length: 1119
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGAACAATACTGAATTTTATGATCGTCTGGGGGTATCCAAAAACGCTTCGGCAGACGAA
    ATCAAAAAGGCTTATCGTAAGCTTTCCAAAAAATATCACCCAGATATCAACAAGGAGCCT
    GGTGCTGAGGACAAGTACAAGGAAGTTCAAGAAGCCTATGAGACTTTGAGTGACGACCAA
    AAACGTGCTGCCTATGACCAGTATGGTGCTGCAGGCGCCAATGGTGGTTTCGGTGGTTTC
    AATGGGGCAGGTGGCTTCGGTGGTTTTGAGGATATTTTCTCAAGTTTCTTCGGCGGAGGC
    GGTTCTTCGCGCAATCCAAACGCTCCTCGCCAAGGAGATGATCTCCAGTATCGTGTCAAT
    TTGACCTTTGAAGAAGCTATCTTCGGAACTGAGAAGGAAGTTAAGTATCATCGTGAAGCT
    GGCTGTCGTACATGTAATGGCTCTGGTGCTAAGCCAGGGACAAGTCCAGTCACTTGTGGA
    CGCTGTCATGGCGCTGGTGTCATTAACGTCGATACGCAGACTCCTCTTGGTATGATGCGT
    CGCCAAGTAACCTGTGATGTCTGTCACGGTCGAGGAAAAGAAATCAAATATCCATGTACA
    ACCTGTCATGGAACAGGTCATGAGAAACAAGCTCATAGCGTACATGTGAAAATCCCTGCT
    GGTGTGGAAACAGGTCAACAAATTCGCCTCGCTGGTCAAGGTGAAGCAGGCTTTAACGGT
    GGACCTTATGGTGACTTGTATGTAGTAGTTTCTGTGGAAGCTAGCGACAAGTTTGAACGT
    GAAGGAACGACTATCTTCTACAATCTCAACCTCAACTTTGTCCAAGCGGCTCTTGGTGAT
    ACAGTAGATATTCCAACTGTTCACGGTGATGTTGAATTGGTTATTCCAGAGGGAACTCAG
    ACTGGTAAGAAATTCCGCCTACGTAGTAAGGGGGCACCGAGCCTTCGTGGCGGTGCAGTT
    GGTGACCAATACGTTACTGTTAATGTCGTAACACCGACAGGCTTGAACGACCGCCAAAAA
    GTAGCCTTGAAAGAATTCGCGGCTGCTGGTGACTTGAAAGTAAATCCAAAGAAAAAAGGC
    TTCTTTGACCATATTAAAGATGCCTTTGATGGAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1119

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPR_RS02340 [old locus tag: spr0456 ]
  • symbol: DnaJ
  • description: molecular chaperone DnaJ
  • length: 372
  • theoretical pI: 7.25998
  • theoretical MW: 40055.3
  • GRAVY: -0.602688

⊟Function[edit | edit source]

  • TIGRFAM:
    chaperone protein DnaJ (TIGR02349; HMM-score: 453.2)
    and 4 more
    Cellular processes Cellular processes Chemotaxis and motility terminal organelle assembly protein TopJ (TIGR03835; HMM-score: 94.8)
    Genetic information processing Protein fate Protein folding and stabilization Fe-S protein assembly co-chaperone HscB (TIGR00714; HMM-score: 23.1)
    c(7)-type cytochrome triheme domain (TIGR04257; HMM-score: 7)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair excinuclease ABC subunit A (TIGR00630; EC 3.1.25.-; HMM-score: 5.6)
  • TheSEED: see spr0456
  • PFAM:
    no clan defined DnaJ_C; DnaJ C terminal domain (PF01556; HMM-score: 138.8)
    and 9 more
    Chaperone-J (CL0392) DnaJ; DnaJ domain (PF00226; HMM-score: 89.7)
    no clan defined DnaJ_CXXCXGXG; DnaJ central domain (PF00684; HMM-score: 58.4)
    Anti-TRAP; Tryptophan RNA-binding attenuator protein inhibitory protein (PF15777; HMM-score: 18.3)
    Multiheme_cytos (CL0317) Cytochrome_C7; Cytochrome c7 and related cytochrome c (PF14522; HMM-score: 17.3)
    no clan defined RseC_MucC; Positive regulator of sigma(E), RseC/MucC (PF04246; HMM-score: 12.7)
    DUF5351; Family of unknown function (DUF5351) (PF17302; HMM-score: 10.4)
    Multiheme_cytos (CL0317) Cytochrom_c3_2; Cytochrome c3 (PF14537; HMM-score: 9.8)
    RING (CL0229) zf-RING_15; KIAA1045 RING finger (PF16744; HMM-score: 9.7)
    no clan defined TackOD1; Thaumarchaeal output domain 1 (PF18551; HMM-score: 7.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.023781
    • TAT(Tat/SPI): 0.002549
    • LIPO(Sec/SPII): 0.004279
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNNTEFYDRLGVSKNASADEIKKAYRKLSKKYHPDINKEPGAEDKYKEVQEAYETLSDDQKRAAYDQYGAAGANGGFGGFNGAGGFGGFEDIFSSFFGGGGSSRNPNAPRQGDDLQYRVNLTFEEAIFGTEKEVKYHREAGCRTCNGSGAKPGTSPVTCGRCHGAGVINVDTQTPLGMMRRQVTCDVCHGRGKEIKYPCTTCHGTGHEKQAHSVHVKIPAGVETGQQIRLAGQGEAGFNGGPYGDLYVVVSVEASDKFEREGTTIFYNLNLNFVQAALGDTVDIPTVHGDVELVIPEGTQTGKKFRLRSKGAPSLRGGAVGDQYVTVNVVTPTGLNDRQKVALKEFAAAGDLKVNPKKKGFFDHIKDAFDGE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPR_RS02340&oldid=127035"