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serotype 4
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serotype 1
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serotype 3
SPN034183
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SPN994038
serotype 3
SPN994039
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serotype 4
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serotype 1

NCBI: 26-OCT-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: SPR_RS02700 [old locus tag: spr0533 ]
  • pan locus tag?: PNEUPAN001536000
  • symbol: SPR_RS02700
  • pan gene symbol?: glnP2a
  • synonym:
  • product: amino acid ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPR_RS02700 [old locus tag: spr0533 ]
  • symbol: SPR_RS02700
  • product: amino acid ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 532771..533448
  • length: 678
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGACAGATTTATCATCTTGGACAGCCTATTTTCAGGATTTTGGACAATTTTTCAATGGT
    TTCCTCTTCACCCTTGCCCTAGCGGTTGGTTCCTTTATCCTCGCTATGGTTTTGGGCATC
    TTCTTTGGTGCCATGTCAACCAGTAAACGTCCAATTTTACGCATTTTAGCTCGCATCTTT
    GTTGAATTTTACCAAAATACTCCCCTCTTGGTGCAGTTTGTTATTGTTTTTTATGGCCTA
    CCTCTTATCAGTGACCATATCATCATGATTCCAATTTATTGGACAGCCGTTCTCTGCGTG
    GGACTCTATCACGGCGCTTATATCGCTGAGGTTATTCGTTCAGGGATTCAGTCTATTCCT
    AGTGGTCAGATGGAGGCCGCCTTGTCGCAAGGTTTTACCTATATCAGTGCCATGCGCTTG
    ATTATCTTGCCTCAGGCCTTCCGCATCATTCTCCCTCCATTGACCAACCAAATTGTTAAC
    CTCATCAAGAACACCTCTACTGTAGCTATCATCTCTGGAGTAGACTTGATGTTTGTGACT
    AAGTCTTGGTCGGCTCTAAACGGAAACTATATCCCAGCCTTTTTAGGTGCTGCTCTTCTC
    TACTTTGCCCTATGCTTCCCTGTTGCCCAGTTTGGTCGCAAGATGGAGCAAGCCAACAAA
    AAAGCCTATTCACTTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    678

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPR_RS02700 [old locus tag: spr0533 ]
  • symbol: SPR_RS02700
  • description: amino acid ABC transporter permease
  • length: 225
  • theoretical pI: 9.49892
  • theoretical MW: 25011.5
  • GRAVY: 0.780889

⊟Function[edit | edit source]

  • TIGRFAM:
    ectoine/hydroxyectoine ABC transporter, permease protein EhuC (TIGR03004; HMM-score: 128.9)
    ectoine/hydroxyectoine ABC transporter, permease protein EhuD (TIGR03003; HMM-score: 119.6)
    and 4 more
    Metabolism Transport and binding proteins Amino acids, peptides and amines amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family (TIGR01726; HMM-score: 85.4)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 28.5)
    choline ABC transporter, permease protein (TIGR03416; HMM-score: 17)
    Metabolism Transport and binding proteins Other K-Cl cotransporter (TIGR00930; HMM-score: 14.7)
  • TheSEED: see spr0533
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 66.5)
    and 1 more
    no clan defined DUF3272; Protein of unknown function (DUF3272) (PF11676; HMM-score: 12)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001556
    • TAT(Tat/SPI): 0.002402
    • LIPO(Sec/SPII): 0.004401
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTDLSSWTAYFQDFGQFFNGFLFTLALAVGSFILAMVLGIFFGAMSTSKRPILRILARIFVEFYQNTPLLVQFVIVFYGLPLISDHIIMIPIYWTAVLCVGLYHGAYIAEVIRSGIQSIPSGQMEAALSQGFTYISAMRLIILPQAFRIILPPLTNQIVNLIKNTSTVAIISGVDLMFVTKSWSALNGNYIPAFLGAALLYFALCFPVAQFGRKMEQANKKAYSL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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