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JJA
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MDRSPN001
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NCTC7466
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SP49
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SPN032672
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SPN034156
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SPN034183
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serotype 1

NCBI: 25-NOV-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: SPR_RS10020 [old locus tag: spr1965 ]
  • pan locus tag?: PNEUPAN003847000
  • symbol: SPR_RS10020
  • pan gene symbol?: fucL
  • synonym:
  • product: glycosyl hydrolase family 98 C-terminal domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPR_RS10020 [old locus tag: spr1965 ]
  • symbol: SPR_RS10020
  • product: glycosyl hydrolase family 98 C-terminal domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1953453..1956569
  • length: 3117
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    ATGAATAAAGAAAAAATAAAAAGAAAATTAATCACAATACTGTTTGTATGTATTGGGATG
    TTATGTTTTGGATTGTTAGCAGGAGTTAAGGCTGATAATCGTGTTCAAATGAGAACGACG
    ATTAATAATGAATCGCCATTGTTGCTTTCTCCGTTGTATGGCAATGATAATGGTAACGGA
    TTATGGTGGGGGAACACATTGAAGGGAGCATGGGAAGCTATTCCTGAAGATGTAAAACCA
    TATGTAGCGATTGAACTTCATCCTGCAAAAGTCTGTAAACCAACAAGTTGTATTCCACGA
    GATACGAAAGAATTGAGAGAATGGTATGTCAAGATGTTGGAGGAAGCTCAAAGTCTAAAC
    ATTCCAGTTTTCTTGGTTATTATGTCGGCTGGAGAGCGTAATACAGTTCCTCCAGAGTGG
    TTAGATGAACAATTCCAAAAGTATAGTGTGTTAAAAGGTGTTTTAAATATTGAGAATTAT
    TGGATTTACAATAACCAGTTAGCTCCGCATAGTGCTAAATATTTGGAAGTTTGTGCCAAA
    TATGGAGCGCATTTTATCTGGCATGATCATGAAAAATGGTTCTGGGAAACTATTATGAAT
    GATCCGACATTCTTTGAAGCGAGTCAAAAATATCATAAAAATTTGGTGTTGGCAACTAAA
    AATACGCCAATAAGAGATGATGCGGGTACAGATTCTATCGTTAGTGGATTTTGGTTGAGT
    GGCTTATGTGATAACTGGGGCTCATCAACAGATACATGGAAATGGTGGGAAAAACATTAT
    ACAAACACATTTGAAACTGGAAGAGCTAGGGATATGAGATCCTATGCATCGGAACCAGAA
    TCAATGATTGCTATGGAAATGATGAATGTATATACTGGGGGAGGCACAGTTTATAATTTC
    GAATGTGCCGCGTATACATTTATGACAAATGATGTACCAACTCCAGCATTTACTAAAGGT
    ATTATTCCTTTCTTTAGACATGCTATACAAAATCCAGCTCCAAGTAAGGAAGAAGTTGTA
    AATAGAACAAAAGCTGTATTTTGGAATGGAGAAGGTAGGATTAGTTCATTAAACGGATTT
    TATCAAGGACTTTATTCGAATGATGAAACAATGCCTTTATATAATAATGGGAGATATCAT
    ATTCTTCCTGTAATACATGAGAAAATTGATAAGGAAAAGATTTCATCTATATTCCCTAAT
    GCAAAAATTTTGACTAAAAATAGTGAGGAATTGTCTAGTAAAGTCAACTATTTAAACTCG
    CTTTATCCAAAACTTTATGAAGGAGATGGGTATGCTCAGCGTGTAGGTAATTCCTGGTAT
    ATTTATAATAGTAATGCTAATATCAATAAAAATCAGCAAGTAATGTTGCCTATGTATACT
    AATAATACAAAGTCGTTATCGTTAGATTTGACGCCACATACTTACGCTGTTGTTAAAGAA
    AATCCAAATAATTTACATATTTTATTGAACAATTACAGGACAGATAAGACAGCTATGTGG
    GCATTATCAGGAAATTTTGATGCATCAAAAAGTTGGAAGAAAGAAGAATTAGAGTTAGCG
    AACTGGATAAGCAAAAATTATTCCATCAATCCTGTAGATAATGACTTTAGGACAACAACA
    CTTACATTAAAAGGGCATACTGGTCATAAACCTCAGATAAATATAAGTGGCGATAAAAAT
    CATTATACTTATACAGAAAATTGGGATGAGAATACCCATGTTTATACCATTACGGTTAAT
    CATAATGGAATGGTAGAGATGTCTATAAATACTGAAGGGACAGGCCCAGTCTCTTTCCCA
    ACACCAGATAAATTTAATGATGGTAATTTGAATATAGCATATGCAAAACCAACAACACAA
    AGTTCTGTAGATTACAATGGAGACCCTAATAGAGCTGTGGATGGTAACAGAAATGGTAAT
    TTTAACTCTGGTTCTGTAACACACACTAGGGCAGATAATCCCTCTTGGTGGGAAGTCGAT
    TTGAAAAAAATGGATAAAGTTGGGCTTGTTAAAATTTATAATCGCACAGATGCTGAGACT
    CAACGTCTATCTAATTTTGATGTGATTCTATATGACAATAATAGAAACGAAGTTGCTAAG
    AAACATGTTAATAATTTGTCAGGTGAATCTGTTAGTCTAGATTTCAAAGAAAAAGGAGCA
    AGGTATATTAAAGTTAAATTACTAACGAGTGGAGTGCCTTTGAGTTTAGCAGAAGTAGAG
    GTTTTTAGAGAATCAGATGGTAAGCAATCTGAAGAGGATATAGATAAAATAACAGAAGAT
    AAAGTAGTCTCTACAAATAAGGTAGCTACTCAAAGTTCAACCAATTATGAGGGTGTAGCT
    GCTTTAGCAGTTGATGGTAATAAAGATGGAGATTACGGACATCATTCGGTGACTCATACT
    AAGGCAGATTCTAACGCTTGGTGGCAGGTCGATCTGGGAGAAGAGTTTACGGTTTCTAAA
    GTTGATATTTATAATAGAACAGATGCCGAACCTCAGCGTTTATCTAATTTTGATGTTATT
    TTTCTATCTTCATCAGGAGAAGAAGTTTTTAGAAGACATTTTGATAAAGTAGTTGATGGT
    TTGTTATCTTTAAAAGTACCTTCTGTAGGGGCTAAGCTAGTCAAAATAGAATTAAAATCA
    GCAGCTATTCCGTTAAGTTTAGCGGAAGTTGAAGTCTATGGTTCAAAGAGAACTCCGAAG
    AAACTTTCTAATATTGCATTAACCAAAGAAACTCGACAGAGTTCAACGGATTACAATGGT
    TTTTCTCGTCTAGCAGTTGATGGAAATAAAAACGGAGATTATGGTCATCATTCAGTGACT
    CATACCAAAGGAGATTCTCCTTCATGGTGGGAGATAGATTTAGCACAAACCGAAGAATTA
    GAAAAGTTAATTATTTATAATAGAACAGATGCTGAAATTCAGAGATTATCAAATTTTGAT
    ATTATTATATATGATTCAAATAATCATGAAGTTTTTAAACAACATATTGACAGTTTAGAA
    AGCAATAATCTATCCATAGACTTAAAAGGGCTGAAGGGAAAAAAGGTTAGAATTTCTTTG
    AGAAACGCAGGAATTCCTTTAAGTTTGGCAGAGGTAGAGGTTTATACTTATAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2940
    3000
    3060
    3117

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPR_RS10020 [old locus tag: spr1965 ]
  • symbol: SPR_RS10020
  • description: glycosyl hydrolase family 98 C-terminal domain-containing protein
  • length: 1038
  • theoretical pI: 6.46171
  • theoretical MW: 117726
  • GRAVY: -0.560308

⊟Function[edit | edit source]

  • TIGRFAM:
    conserved hypothetical protein (TIGR03843; HMM-score: 12)
  • TheSEED: see spr1965
  • PFAM:
    no clan defined Glyco_hydro_98C; Glycosyl hydrolase family 98 C-terminal domain (PF08307; HMM-score: 430.3)
    and 2 more
    Glyco_hydro_98M; Glycosyl hydrolase family 98 (PF08306; HMM-score: 321.7)
    GBD (CL0202) F5_F8_type_C; F5/8 type C domain (PF00754; HMM-score: 118)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0032
    • Cytoplasmic Membrane Score: 0.0061
    • Cell wall & surface Score: 0.0255
    • Extracellular Score: 0.9651
  • SignalP: Signal peptide SP(Sec/SPI) length 31 aa
    • SP(Sec/SPI): 0.978618
    • TAT(Tat/SPI): 0.002901
    • LIPO(Sec/SPII): 0.008703
    • Cleavage Site: CS pos: 31-32. VKA-DN. Pr: 0.9558
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNKEKIKRKLITILFVCIGMLCFGLLAGVKADNRVQMRTTINNESPLLLSPLYGNDNGNGLWWGNTLKGAWEAIPEDVKPYVAIELHPAKVCKPTSCIPRDTKELREWYVKMLEEAQSLNIPVFLVIMSAGERNTVPPEWLDEQFQKYSVLKGVLNIENYWIYNNQLAPHSAKYLEVCAKYGAHFIWHDHEKWFWETIMNDPTFFEASQKYHKNLVLATKNTPIRDDAGTDSIVSGFWLSGLCDNWGSSTDTWKWWEKHYTNTFETGRARDMRSYASEPESMIAMEMMNVYTGGGTVYNFECAAYTFMTNDVPTPAFTKGIIPFFRHAIQNPAPSKEEVVNRTKAVFWNGEGRISSLNGFYQGLYSNDETMPLYNNGRYHILPVIHEKIDKEKISSIFPNAKILTKNSEELSSKVNYLNSLYPKLYEGDGYAQRVGNSWYIYNSNANINKNQQVMLPMYTNNTKSLSLDLTPHTYAVVKENPNNLHILLNNYRTDKTAMWALSGNFDASKSWKKEELELANWISKNYSINPVDNDFRTTTLTLKGHTGHKPQINISGDKNHYTYTENWDENTHVYTITVNHNGMVEMSINTEGTGPVSFPTPDKFNDGNLNIAYAKPTTQSSVDYNGDPNRAVDGNRNGNFNSGSVTHTRADNPSWWEVDLKKMDKVGLVKIYNRTDAETQRLSNFDVILYDNNRNEVAKKHVNNLSGESVSLDFKEKGARYIKVKLLTSGVPLSLAEVEVFRESDGKQSEEDIDKITEDKVVSTNKVATQSSTNYEGVAALAVDGNKDGDYGHHSVTHTKADSNAWWQVDLGEEFTVSKVDIYNRTDAEPQRLSNFDVIFLSSSGEEVFRRHFDKVVDGLLSLKVPSVGAKLVKIELKSAAIPLSLAEVEVYGSKRTPKKLSNIALTKETRQSSTDYNGFSRLAVDGNKNGDYGHHSVTHTKGDSPSWWEIDLAQTEELEKLIIYNRTDAEIQRLSNFDIIIYDSNNHEVFKQHIDSLESNNLSIDLKGLKGKKVRISLRNAGIPLSLAEVEVYTYK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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