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ST556
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TCH8431/19A
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Taiwan19F-14
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Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Taiwan19F-14
  • locus tag: SPT_0603 [new locus tag: SPT_RS03005 ]
  • pan locus tag?: PNEUPAN001460000
  • symbol: SPT_0603
  • pan gene symbol?: tnp (pseudogene)
  • synonym:
  • product: integrase core domain protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPT_0603 [new locus tag: SPT_RS03005 ]
  • symbol: SPT_0603
  • product: integrase core domain protein
  • replicon: chromosome
  • strand: -
  • coordinates: 562025..562858
  • length: 834
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGACTGAGTTTTCGTTAGTTCTTCTTCTAAAATCCATTAAACTAGCTCGTTGGACCTAC
    TACTATCACTTGAAACAGCTAGACAAAACAGATAAGGACCAAGAGCTTAAAGCTGAAATT
    CAATCCATTTTTATCGAACACAAGGGAAATTATGCTTATCGTCGGATTTATTTAGAACTA
    AGAAATCGTGCTTATCTGGTAAATCATAAAAGAGTTCAAGGCTTGATGAAAGTACTCAAT
    TTACAAGCTAAAATGCGACAGAAACGAAAATATTCTTCTCATAAAGGAGACGTTGGCAAG
    AAGGCAGAGAATCTCATTCAAGGCCAATTTGAAGGCTCTAAAACAATGGAAAAGTGCTAT
    ACAGATGTGACAGAATTTGCCATTCCAGCAAGTACTCAAAAGCTTTACTTATCACCAGTT
    TTAGATGGCTTTAACAGCGAAATTATTGCTTTTAATCTTTCTTGTTCGCCTAATTTAGAA
    CAAGTACAAACAATGTTGGAACAGGCATTCACAGAGAAGCACTACGAAAATACGATTCTC
    CATAGTGACCAAGGCTGGCAATACCAACACGATTCTTATCATCAGTTTCTTGAGGGTAAG
    GGAATTCAAGCATCCATGTCACGTAAGGGAAACAGCCAAGACAACGGTATGATGGAGTCC
    TTCTTTGGGATTCTGAAATCGGAAATGTTTTATGGCTATGAGAAAACATTTAAATCACTT
    AATCAATTGGAACAAGCTATTGTAGACTATATTGATTACTACAACAATAAACGAATTAAG
    GTAAAACTAAAAGGACTTAGCCTTGTGCAATACAGAACTAAATCCTTCGGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    834

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPT_0603 [new locus tag: SPT_RS03005 ]
  • symbol: SPT_0603
  • description: integrase core domain protein
  • length: 277
  • theoretical pI: 9.67338
  • theoretical MW: 32499
  • GRAVY: -0.630325

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Mobile element protein
  • PFAM:
    RNase_H (CL0219) rve_2; Integrase core domain (PF13333; HMM-score: 78.5)
    rve; Integrase core domain (PF00665; HMM-score: 62.9)
    and 3 more
    HTH (CL0123) HTH_21; HTH-like domain (PF13276; HMM-score: 60.8)
    RNase_H (CL0219) rve_3; Integrase core domain (PF13683; HMM-score: 49.5)
    DDE_Tnp_IS240; DDE domain (PF13610; HMM-score: 21.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9688
    • Cytoplasmic Membrane Score: 0.0006
    • Cell wall & surface Score: 0.0194
    • Extracellular Score: 0.0112
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003659
    • TAT(Tat/SPI): 0.000227
    • LIPO(Sec/SPII): 0.000904
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACO22793 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTEFSLVLLLKSIKLARWTYYYHLKQLDKTDKDQELKAEIQSIFIEHKGNYAYRRIYLELRNRAYLVNHKRVQGLMKVLNLQAKMRQKRKYSSHKGDVGKKAENLIQGQFEGSKTMEKCYTDVTEFAIPASTQKLYLSPVLDGFNSEIIAFNLSCSPNLEQVQTMLEQAFTEKHYENTILHSDQGWQYQHDSYHQFLEGKGIQASMSRKGNSQDNGMMESFFGILKSEMFYGYEKTFKSLNQLEQAIVDYIDYYNNKRIKVKLKGLSLVQYRTKSFG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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