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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Taiwan19F-14
- locus tag: SPT_0726 [new locus tag: SPT_RS03620 ]
- pan locus tag?: PNEUPAN001656000
- symbol: SPT_0726
- pan gene symbol?: glnP3b
- synonym:
- product: ABC transporter membrane-spanning permease - glutamine transport
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPT_0726 [new locus tag: SPT_RS03620 ]
- symbol: SPT_0726
- product: ABC transporter membrane-spanning permease - glutamine transport
- replicon: chromosome
- strand: -
- coordinates: 690634..691257
- length: 624
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000921 (690634..691257) NCBI
- BioCyc: see SPT_RS03620
- MicrobesOnline: 7474472 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0617 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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541
601ATGCAGGATTCGGGAATCCAAGTACTCTTTCAAGGAAATAATCTCCTGAGAATCTTACAG
GGATTGGGCGTTACGATTGGGATATCCATCCTGTCTGTCCTCTTATCCATGATGTTCGGA
ACAGTCATGGGAATCATCATGACCTCCCATTCTAGAATCATACGATTTTTAACACGATTG
TATCTGGAATTTATCCGTATCATGCCCCAGCTGGTGCTACTCTTCATCGTTTACTTTGGC
TTGGCTCGAAACTTTAATATCAATATCTCAGGTGAGACTTCAGCTATTATCGTTTTTACC
CTCTGGGGAACAGCTGAAATGGGAGACTTGGTACGTGGAGCTATCACTTCTCTCCCTAAA
CATCAGTTTGAAAGTGGACAGGCACTCGGCTTGACTAATGTTCAACTTTACTACCACATC
ATCATCCCACAAGTCTTAAGAAGACTGCTACCGCAGGCTATCAATCTTGTCACTCGGATG
ATTAAAACCACTTCATTCCCAAATCATTCATACCTCTCTCAACTAGATGTAACTTACAAA
ACCCCTGACCTCATGAGCCACTTTCTTCCTCCTCATGAGGTCAGTTTTACTTTCTGCTGT
TCCAGTATCGTTTTTCCTCGCTAG60
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624
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPT_0726 [new locus tag: SPT_RS03620 ]
- symbol: SPT_0726
- description: ABC transporter membrane-spanning permease - glutamine transport
- length: 207
- theoretical pI: 9.76487
- theoretical MW: 23352.6
- GRAVY: 0.547826
⊟Function[edit | edit source]
- TIGRFAM: ectoine/hydroxyectoine ABC transporter, permease protein EhuC (TIGR03004; HMM-score: 90.1)ectoine/hydroxyectoine ABC transporter, permease protein EhuD (TIGR03003; HMM-score: 79.7)Transport and binding proteins Amino acids, peptides and amines amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family (TIGR01726; HMM-score: 73.5)and 4 moreTransport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 41.3)choline ABC transporter, permease protein (TIGR03416; HMM-score: 25.9)Transport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikC (TIGR02790; EC 3.6.3.24; HMM-score: 17.9)Transport and binding proteins Anions molybdate ABC transporter, permease protein (TIGR02141; HMM-score: 15)
- TheSEED :
- Amino acid ABC transporter, permease protein
- PFAM: BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 47.6)and 1 moreGx_transp (CL0315) ECF_trnsprt; ECF transporter, substrate-specific component (PF12822; HMM-score: 11.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.17
- Cytoplasmic Membrane Score: 9.51
- Cellwall Score: 0.16
- Extracellular Score: 0.15
- Internal Helices: 2
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001964
- TAT(Tat/SPI): 0.001748
- LIPO(Sec/SPII): 0.002637
- predicted transmembrane helices (TMHMM): 2
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ACO22821 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MQDSGIQVLFQGNNLLRILQGLGVTIGISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRLYLEFIRIMPQLVLLFIVYFGLARNFNINISGETSAIIVFTLWGTAEMGDLVRGAITSLPKHQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRMIKTTSFPNHSYLSQLDVTYKTPDLMSHFLPPHEVSFTFCCSSIVFPR
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulators: CmbR* (activation (repression)) regulon, CodY (activation (repression)) regulon
CmbR* (TF) important in Cysteine metabolism; RegPrecise transcription unit transferred from TIGR4 data RegPrecise CodY (TF) important in Amino acid metabolism; RegPrecise transcription unit transferred from TIGR4 data RegPrecise
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0617 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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