From PneumoWiki
Jump to navigation Jump to search
TIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Taiwan19F-14
  • locus tag: SPT_0750
  • pan locus tag?:
  • symbol: SPT_0750
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPT_0750
  • symbol: SPT_0750
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 713793..714035
  • length: 243
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP000921 (713793..714035) NCBI
  • BioCyc:
  • MicrobesOnline: 7474496 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGAAATTGACTAAAGAAGAAATCCAAACCATCAAAACACTTTTAAAAGACTCTCGTACA
    GCTAAATATCATAAACGCCTTCAAATCGTTCTATTTCGTCTGATGGGCAAATCTTATAAA
    GAGATTATAGAGCTTTTAGACTGTAATCAAACAACGATTTGGCGAAATGTAAAAAATATG
    AGGAGTTCGGACTCGACTCTCTCCTTCAAGAAACACGTGGTGGTCGTAACCATGCATATA
    TGA
    60
    120
    180
    240
    243

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPT_0750
  • symbol: SPT_0750
  • description: hypothetical protein
  • length: 80
  • theoretical pI: 10.7649
  • theoretical MW: 9508.29
  • GRAVY: -0.33

⊟Function[edit | edit source]

  • TIGRFAM:
    RNA polymerase sigma factor, sigma-70 family (TIGR02937; HMM-score: 16.4)
    RNA polymerase sigma factor, SigM family (TIGR02950; HMM-score: 14.6)
    and 1 more
    Metabolism Energy metabolism Other catechol 1,2-dioxygenase (TIGR02439; EC 1.13.11.1; HMM-score: 11.2)
  • TheSEED  :
    • hypothetical protein
  • PFAM:
    HTH (CL0123) HTH_23; Homeodomain-like domain (PF13384; HMM-score: 27)
    and 5 more
    HTH_38; Helix-turn-helix domain (PF13936; HMM-score: 19.5)
    HTH_28; Helix-turn-helix domain (PF13518; HMM-score: 17.9)
    Sigma70_r4_2; Sigma-70, region 4 (PF08281; HMM-score: 16.8)
    HTH_11; HTH domain (PF08279; HMM-score: 15.3)
    no clan defined CCM2_C; Cerebral cavernous malformation protein, harmonin-homology (PF16545; HMM-score: 13.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.7374
    • Cytoplasmic Membrane Score: 0.0059
    • Cell wall & surface Score: 0.0025
    • Extracellular Score: 0.2542
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005369
    • TAT(Tat/SPI): 0.000302
    • LIPO(Sec/SPII): 0.001032
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACO22337 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKLTKEEIQTIKTLLKDSRTAKYHKRLQIVLFRLMGKSYKEIIELLDCNQTTIWRNVKNMRSSDSTLSFKKHVVVVTMHI

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPT_0750&oldid=165582"