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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Taiwan19F-14
  • locus tag: SPT_0853 [new locus tag: SPT_RS04230 ]
  • pan locus tag?: PNEUPAN002747000
  • symbol: pncB
  • pan gene symbol?: pncB
  • synonym:
  • product: putative nicotinate phosphoribosyltransferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPT_0853 [new locus tag: SPT_RS04230 ]
  • symbol: pncB
  • product: putative nicotinate phosphoribosyltransferase
  • replicon: chromosome
  • strand: +
  • coordinates: 801114..802574
  • length: 1461
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    ATGTATCCAGATGATAGTTTGACATTGCACACGGACTTGTACCAGATCAACATGATGCAG
    GTTTACTTTGACCAAGGGATTCACAATAAGAAGGCGGTCTTTGAGGTGTATTTCCGCCAA
    CAGCCTTTTAAGAACGGCTATGCGGTTTTTGCAGGTTTGGAAAGAATTGTGAACTATCTT
    GAAGACTTGCGTTTTTCAGATAGTGATATAGCCTATTTGGAGTCGCTTGGTTATCATGGG
    GCGTTCTTGGATTACCTTCGCAATTTCAAGTTGGAGTTGACCGTTCGTTCTGCCCAAGAA
    GGGGATTTGGTTTTTGCTAATGAACCGATTGTGCAGGTGGAAGGACCTCTAGCCCAATGT
    CAGTTGGTCGAAACGGCTCTTTTGAACATCGTCAACTACCAGACCTTGGTGGCGACGAAG
    GCAGCTCGTATTCGTTCGGTTATCGAAGATGAACCCTTGATGGAGTTTGGGACACGTCGG
    GCTCAAGAAATGGATGCGGCCATCTGGGGAACACGCGCAGCGGTGATTGGTGGCGCCAAT
    GGAACCAGCAACGTGCGTGCGGGTAAGCTCTTTGACATTCCTGTTTTGGGAACCCATGCC
    CATGCCTTGGTACAGGTTTATGGCAATGACTATGAGGCTTTCAAGGCTTACGCTGCGACC
    CACAAAAATTGTGTCTTTCTTGTGGATACCTATGATACCCTTCGCATCGGTGTACCAGCT
    GCCATTCAGGTGGCGCGTGAGCTGGGTGATCAGATTAACTTTATGGGTGTGCGGATTGAC
    TCTGGGGATATTGCCTACATTTCTAAGAAAGTCCGTCAGCAACTGGACGAGGCTGGATTT
    ACAGAGGCTAAGATTTATGCTTCTAATGATCTAGATGAAAATACCATCCTTAACCTCAAG
    ATGCAAAAGGCCAAGATTGATGTCTGGGGTGTGGGTACCAAGCTGATTACAGCCTATGAC
    CAGCCGGCTCTTGGGGCGGTTTACAAGATTGTTGCAATTGAAGATGAAACTGGTCAGATG
    CACAATACGATTAAGCTGTCTAATAATGCGGAAAAAGTGTCGACGCCAGGTAAGAAGCAG
    GTGTGGCGCATTACCAGTCGTGAAAAAGGCAAGTCAGAAGGTGACTACATCACTTATGAT
    GGTGTGGATATTAGCGACATGACAGAAATCAAGATGTTCCATCCGACCTATACATACATC
    AAGAAGACGGTTCGTAATTTTGATGCCGTTCCTCTCTTGGTGGATATCTTCAAAGAAGGA
    ATATTAGTTTACAACTTGCCTAGTTTGACTGACATTCAGGATTATGCCCGTAAGGAATTT
    GACAAGTTGTGGGATGAGTATAAGCGTGTGCTCAATCCGCAGCACTATCCAGTGGATTTG
    GCGCGTGATGTATGGCAAGATAAGATGGACTTGATTGATAAGATGCGCAAGGAAGCCCTT
    GGTGAAGGAGAAGAAGAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1461

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPT_0853 [new locus tag: SPT_RS04230 ]
  • symbol: PncB
  • description: putative nicotinate phosphoribosyltransferase
  • length: 486
  • theoretical pI: 4.88516
  • theoretical MW: 55108.2
  • GRAVY: -0.286214

⊟Function[edit | edit source]

  • reaction:
    EC 6.3.4.21?  ExPASy
    Nicotinate phosphoribosyltransferase Nicotinate + 5-phospho-alpha-D-ribose 1-diphosphate + ATP + H2O = beta-nicotinate D-ribonucleotide + diphosphate + ADP + phosphate
  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pyridine nucleotides nicotinate phosphoribosyltransferase (TIGR01513; EC 6.3.4.21; HMM-score: 655.9)
    and 2 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pyridine nucleotides nicotinate phosphoribosyltransferase (TIGR01514; EC 6.3.4.21; HMM-score: 80.4)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pyridine nucleotides nicotinate-nucleotide diphosphorylase (carboxylating) (TIGR00078; EC 2.4.2.19; HMM-score: 21.1)
  • TheSEED  :
    • Nicotinate phosphoribosyltransferase (EC 2.4.2.11)
    Cofactors, Vitamins, Prosthetic Groups, Pigments NAD and NADP NAD and NADP cofactor biosynthesis global  Nicotinate phosphoribosyltransferase (EC 2.4.2.11)
  • PFAM:
    Hybrid (CL0105) NAPRTase_N; Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain (PF17767; HMM-score: 141.2)
    and 3 more
    no clan defined NAPRTase_C; Nicotinate phosphoribosyltransferase C-terminal domain (PF17956; HMM-score: 97.8)
    TIM_barrel (CL0036) NAPRTase; Nicotinate phosphoribosyltransferase (NAPRTase) family (PF04095; HMM-score: 35.4)
    Hybrid (CL0105) QRPTase_N; Quinolinate phosphoribosyl transferase, N-terminal domain (PF02749; HMM-score: 14.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00106
    • TAT(Tat/SPI): 0.000144
    • LIPO(Sec/SPII): 0.000249
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACO22709 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MYPDDSLTLHTDLYQINMMQVYFDQGIHNKKAVFEVYFRQQPFKNGYAVFAGLERIVNYLEDLRFSDSDIAYLESLGYHGAFLDYLRNFKLELTVRSAQEGDLVFANEPIVQVEGPLAQCQLVETALLNIVNYQTLVATKAARIRSVIEDEPLMEFGTRRAQEMDAAIWGTRAAVIGGANGTSNVRAGKLFDIPVLGTHAHALVQVYGNDYEAFKAYAATHKNCVFLVDTYDTLRIGVPAAIQVARELGDQINFMGVRIDSGDIAYISKKVRQQLDEAGFTEAKIYASNDLDENTILNLKMQKAKIDVWGVGTKLITAYDQPALGAVYKIVAIEDETGQMHNTIKLSNNAEKVSTPGKKQVWRITSREKGKSEGDYITYDGVDISDMTEIKMFHPTYTYIKKTVRNFDAVPLLVDIFKEGILVYNLPSLTDIQDYARKEFDKLWDEYKRVLNPQHYPVDLARDVWQDKMDLIDKMRKEALGEGEEE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: Rex* (repression) regulon
    Rex*(TF)important in Energy metabolism; RegPrecise 

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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