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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Taiwan19F-14
  • locus tag: SPT_2208 [new locus tag: SPT_RS10920 ]
  • pan locus tag?: PNEUPAN003889000
  • symbol: SPT_2208
  • pan gene symbol?: cbpA
  • synonym: pspC
  • product: surface protein PspC

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPT_2208 [new locus tag: SPT_RS10920 ]
  • symbol: SPT_2208
  • product: surface protein PspC
  • replicon: chromosome
  • strand: -
  • coordinates: 2061822..2063525
  • length: 1704
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    TTGCCGTCAAAAATAAAAGCAAAGTTAGAAGTAGCTTTTGATCAGTTTAAAAAAGATACA
    TTGAAACCAGGAGAAAAGGTAGCAGAAGCTGAGAAGAAAGTTGCAGAAGCTAAGAAAAAA
    GCCGAGGATCAAAAAGAACAAGATCGCCGTAACTACCCAACCAATACTTACAAAACGCTT
    GAACTTGAAATTGCTGAGTCCGATGTGAAAGTTAAAGAAGCGGAGCTTGAACTAGTAAAA
    GAGGAAGCTAAGGAATCTCGAAACGAGGAAAAAGTTAAGCAAGCAAAAGCGAAAGTTGAG
    AGTGAAAAAGCAGAGGCTATAAGGTTAGAAGAAATCAAGACAGATCGTGAAGAAGCTAAA
    CGAAAAGCAGATGCTAAGTTGAAGGAAGCTGTTGAAAACAATGCAGCGACTTCAGAGCAA
    GGTGAACCAAAGAGGCGGGTAAAACGAGGAGTTCTTGGAGAGCCAGCAACACCTGATAAA
    AAAGAAAATGATGCGAAGTCTTCAGATTCTAGCGTAGGTGAAGAAACTCTTCCAAGCCCA
    TCCCTGAAACCAGAAAAAAAGGTTGCAGAAGCTGAGAAGAAGGTTGCAGAAGCTGAGAAA
    AAAGCCAAGGATCAAAAAGAAGAAGATCGCCGTAACTACCCAACCAATACTTACAAAACG
    CTTGAACTTGAAATTGCTGAGTCCGATGTGAAAGTTAAAGAAGCGGAGCTTGAACTAGTA
    AAAGAGGAAGCTAAGGAATCTCGAAACGAGGAAAAAGTTAAGCAAGCAAAAGCGAAAGTT
    GAGAGTAAAAAAGCTGAGGCTACAAGGTTAGAAAAAATCAAGACAGATCGTAAAAAAGCA
    GAAGAAGCTAAACGAAAAGCAGCAGAAGAAGATAAAGTTAAAGAAAAACCAGCTGAACAA
    CCACAACCAGCGCCGGCTCCAAAACCAGAAAAACCAGCTCCAGCTCCAAAACCAGAGAAT
    CCAGCTGAACAACCAAAAGCAGAAAAACCAGCTGATCAACAAGCTGAAGAAGACTATGCT
    CGTAGATCAGAAGAAGAATATAATCGCTTGACTCAACAGCAACCGCCAAAAACTGAAAAA
    CCAGCACAACCATCTACTCCAAAAACAGGCTGGAAACAAGAAAACGGTATGTGGTACTTC
    TACAATACTGATGGTTCAATGGCGACAGGATGGCTCCAAAACAATGGCTCATGGTACTAT
    CTAAACGCTAATGGTTCAATGGCAACAGGATGGCTCCAATACAATGGTTCATGGTACTAC
    CTAAACGCTAATGGTGATATGGCGACAGGATGGCTCCAAAACAATGGTTCATGGTACTAC
    CTAAACGCTAATGGTTCAATGGCGACAGGATGGCTCCAATACAATGGCTCATGGTACTAC
    CTAAACGCTAATGGTGATATGGCGACAGGATGGCTCCAAAACAATGGCTCATGGTACTAC
    CTAAACGCTAATGGTTCAATGGCGACAGGATGGCTCCAAAACAATGGCTCATGGTACTAC
    CTAAACGCTAATGGTTCAATGGCGACAGATTGGGTGAAAGATGGAGATACCTGGTACTAT
    CTTGAAGCATCAGGTGCTATGAAAGCAAGCCAATGGTTCAAAGTATCAGATAAATGGTAC
    TATGTCAATGGCTCAGGTGCCCTTGCAGTCAACACAACTGTAGATAGCTATAGAGTCAAT
    GCCAATGGTGAATGGGTAAACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1704

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPT_2208 [new locus tag: SPT_RS10920 ]
  • symbol: SPT_2208
  • description: surface protein PspC
  • length: 567
  • theoretical pI: 5.42903
  • theoretical MW: 64186.7
  • GRAVY: -1.21481

⊟Function[edit | edit source]

  • TIGRFAM:
    glucan-binding repeat (TIGR04035; HMM-score: 54.4)
  • TheSEED  :
    • Choline binding protein A
    Stress Response Osmotic stress Choline and Betaine Uptake and Betaine Biosynthesis  Choline binding protein A
  • PFAM:
    Choline_binding (CL0694) Choline_bind_3; Choline-binding repeat (PF19127; HMM-score: 221.4)
    and 4 more
    Choline_bind_1; Putative cell wall binding repeat (PF01473; HMM-score: 173.1)
    Choline_bind_2; Choline-binding repeat (PF19085; HMM-score: 51.9)
    no clan defined DUF4224; Domain of unknown function (DUF4224) (PF13986; HMM-score: 19.2)
    FliC; Flagellin protein (PF12445; HMM-score: 16.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 0.09
    • Cellwall Score: 0.18
    • Extracellular Score: 9.72
    • Internal Helices: 0
  • DeepLocPro: Cell wall & surface
    • Cytoplasmic Score: 0.0099
    • Cytoplasmic Membrane Score: 0.0006
    • Cell wall & surface Score: 0.8409
    • Extracellular Score: 0.1486
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008262
    • TAT(Tat/SPI): 0.001131
    • LIPO(Sec/SPII): 0.001895
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACO24096 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MPSKIKAKLEVAFDQFKKDTLKPGEKVAEAEKKVAEAKKKAEDQKEQDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEAKESRNEEKVKQAKAKVESEKAEAIRLEEIKTDREEAKRKADAKLKEAVENNAATSEQGEPKRRVKRGVLGEPATPDKKENDAKSSDSSVGEETLPSPSLKPEKKVAEAEKKVAEAEKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEAKESRNEEKVKQAKAKVESKKAEATRLEKIKTDRKKAEEAKRKAAEEDKVKEKPAEQPQPAPAPKPEKPAPAPKPENPAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTEKPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYYLNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYYLNANGSMATGWLQNNGSWYYLNANGSMATDWVKDGDTWYYLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDSYRVNANGEWVN

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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