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TIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Taiwan19F-14
  • locus tag: SPT_2251
  • pan locus tag?:
  • symbol: SPT_2251
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPT_2251
  • symbol: SPT_2251
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2105353..2105850
  • length: 498
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP000921 (2105353..2105850) NCBI
  • BioCyc:
  • MicrobesOnline: 7475952 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGGTGTCCAATTTAAAAGAAAATAAAACCTTGGATTTTCATTTTGTAGATGAAGAGGAA
    GGAAAGAAGGGATTGGAAGATGGCGATTACTATATGGTAGTGACTTTACCAAGTGATTTA
    TCTGAAAAAACAACTACATTATCCAATATTCAATCGACAGCAGCTTATCAATCATTGACA
    AGTGAGCAACAAACTGAGATAAGTGATTCTGTATCTCAAAATTTAACTGATAGTATTCAA
    TCGGCTCAGTCAATTGTAGCTTTAGTACAAGATTTACAGGGAAGTTTAGAAAACTTACAA
    AATCAATCTAATCAAGTATCACCTATTACTTCTACTTCTTTGATAGGATTGTCAAGTGGA
    TTAACAGAGATACAAGGAGATGTTACTAGCAAATTAGTTCCTGCCAGTCAGTCGATTGCA
    TCAGGTGTAAACGCATATACTACAGGTGTTGATAAAGTTTCTCAGGACGTCATCCAGAGA
    GCCGTTGGGCTTGGTTGA
    60
    120
    180
    240
    300
    360
    420
    480
    498

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPT_2251
  • symbol: SPT_2251
  • description: hypothetical protein
  • length: 165
  • theoretical pI: 3.89696
  • theoretical MW: 17548.1
  • GRAVY: -0.275758

⊟Function[edit | edit source]

  • TIGRFAM:
    YhgE/Pip N-terminal domain (TIGR03061; HMM-score: 60.9)
    and 1 more
    type VII secretion protein EsaA (TIGR03929; HMM-score: 27)
  • TheSEED  :
    • Phage infection protein
  • PFAM:
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 29.2)
    and 4 more
    no clan defined BORCS6; BLOC-1-related complex sub-unit 6 C-terminal helix (PF10157; HMM-score: 15.7)
    ABC-2 (CL0181) DUF3533; Protein of unknown function (DUF3533) (PF12051; HMM-score: 13.5)
    no clan defined Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 13.4)
    DUF3294; Protein of unknown function (DUF3294) (PF07957; HMM-score: 12.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0023
    • Cytoplasmic Membrane Score: 0.2414
    • Cell wall & surface Score: 0.0703
    • Extracellular Score: 0.6861
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008403
    • TAT(Tat/SPI): 0.000695
    • LIPO(Sec/SPII): 0.000799
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACO22238 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MVSNLKENKTLDFHFVDEEEGKKGLEDGDYYMVVTLPSDLSEKTTTLSNIQSTAAYQSLTSEQQTEISDSVSQNLTDSIQSAQSIVALVQDLQGSLENLQNQSNQVSPITSTSLIGLSSGLTEIQGDVTSKLVPASQSIASGVNAYTTGVDKVSQDVIQRAVGLG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: PipR* regulon
    PipR*(TF)important in Phage infection protein; RegPrecise 

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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