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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 17-DEC-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Taiwan19F-14
  • locus tag: SPT_RS10620 [old locus tag: SPT_2144 ]
  • pan locus tag?: PNEUPAN003817000
  • symbol: SPT_RS10620
  • pan gene symbol?: —
  • synonym:
  • product: SPFH domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPT_RS10620 [old locus tag: SPT_2144 ]
  • symbol: SPT_RS10620
  • product: SPFH domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1994501..1995508
  • length: 1008
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_012469 (1994501..1995508) NCBI
  • BioCyc: SPT_RS10620 BioCyc
  • MicrobesOnline: see SPT_2144
  • PneumoBrowse for strain D39V: SPV_1962 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGACTGAAAAACTAATCAATTCAAAACCAAATGGTGTATTCGCATTGATTCTCATTGAG
    TTGACAATCGTACTTGGTATCTTTATATTTATAATGGGTGTTGGTTCGGAAAACATTTTT
    GGAATTATTATCGGACCTTTACTAATCGTAATTGCAGGTCTAGCTCATGCTGGTTTAAAA
    GTTGTCAAACCTCAGGAAGCTCTGGTTCTGACACTCTTTGGTAATTATACAGGTACCATC
    AAAGAACCTGGTTTTTACTTTGTCAATCCCTTCAGCGTAGCAGTCAACCCTGCAAACCAC
    ACTCGACTTGGACAAAGTGGTGATGTTAGCACAAAATCTCCTTTTTTAGGAGCTAAATCA
    TCAAATGACAATGATGTAAATCTTGAAATTGGCAAGAAACAGATTTCCCTCAAAGTCATG
    ACCTTGAGCAATTCTCGTCAAAAAATCAATGATTGCTTAGGAAACCCTGTAGAAATCGGT
    ATCGCGGTAACTTGGAGAGTTGTCGATACCGCTAAGGCAGTCTTCAACGTTGATAACTAC
    AAAGAATATCTTTCATTGCAATGTGATAGCGCCCTCCGTAATATTGTCCGCATCTATCCT
    TACGATGTGTCTCCTAATGTGGATACTACGGGTGACGGGCAAGCAGATGAAGGTAGTCTC
    CGTGGCTCTAGCGAAATTGTTGCTAACCGTATTCGTGAGGAAATTCAAAGTCGCGTAGAA
    GATGCTGGCTTGGAAATCCTTGAAGCACGTATCACTTACCTAGCTTATGCTCCAGAAATT
    GCTGCCGTTATGCTTCAACGCCAACAAGCATCTGCCATTATTGATGCACGGAAGATGATT
    GTAGATGGTGCTGTAGGAATGGTTGAAATGGCACTAGAACGGCTCAATGAAGGGGAATTA
    GTAGAACTTGACGAAGAACGAAAAGCTGCCATGGTTTCAAATCTCCTTGTCGTTCTTTGT
    GGCAATCATGATGCACAACCAATTGTCAACACAGGAAGTCTTTACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1008

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPT_RS10620 [old locus tag: SPT_2144 ]
  • symbol: SPT_RS10620
  • description: SPFH domain-containing protein
  • length: 335
  • theoretical pI: 4.68734
  • theoretical MW: 36321.6
  • GRAVY: 0.167463

⊟Function[edit | edit source]

  • TIGRFAM:
    HflK protein (TIGR01933; HMM-score: 22.2)
  • TheSEED: see SPT_2144
  • PFAM:
    SPFH (CL0433) Band_7; SPFH domain / Band 7 family (PF01145; HMM-score: 78.4)
    and 1 more
    Yip1 (CL0112) DUF1700; Protein of unknown function (DUF1700) (PF08006; HMM-score: 9.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.78
    • Cytoplasmic Membrane Score: 8.16
    • Cellwall Score: 0.06
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0005
    • Cytoplasmic Membrane Score: 0.8952
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.1041
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004647
    • TAT(Tat/SPI): 0.000257
    • LIPO(Sec/SPII): 0.001555
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000136830 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTEKLINSKPNGVFALILIELTIVLGIFIFIMGVGSENIFGIIIGPLLIVIAGLAHAGLKVVKPQEALVLTLFGNYTGTIKEPGFYFVNPFSVAVNPANHTRLGQSGDVSTKSPFLGAKSSNDNDVNLEIGKKQISLKVMTLSNSRQKINDCLGNPVEIGIAVTWRVVDTAKAVFNVDNYKEYLSLQCDSALRNIVRIYPYDVSPNVDTTGDGQADEGSLRGSSEIVANRIREEIQSRVEDAGLEILEARITYLAYAPEIAAVMLQRQQASAIIDARKMIVDGAVGMVEMALERLNEGELVELDEERKAAMVSNLLVVLCGNHDAQPIVNTGSLY

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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