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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 13-FEB-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae D39V
  • locus tag: SPV_1431 [new locus tag: SPV_RS07600 ]
  • pan locus tag?: PNEUPAN002989000
  • symbol: gtrB
  • pan gene symbol?: gtrB
  • synonym:
  • product: Bactoprenol glucosyl transferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPV_1431 [new locus tag: SPV_RS07600 ]
  • symbol: gtrB
  • product: Bactoprenol glucosyl transferase
  • replicon: chromosome
  • strand: -
  • coordinates: 1447760..1448731
  • length: 972
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP027540 (1447760..1448731) NCBI
  • BioCyc: SPV_1431 BioCyc
  • MicrobesOnline:
  • PneumoBrowse: SPV_1431 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGGATTTGAAGACTAAGATGATGATTTCAATCATCGTCCCTTGTTTAAACGAAGAGGAA
    GTACTTCCTCTTTTTTATCAGGCTCTGGAAGCTTTACTTCCAGATTTGGAAACAGAAATC
    GAGTATGTCTTTGTCGATGATGGATCAAGTGATGGGACCTTGGAACTCTTAAAGGCCTAT
    CGGGAGCAAAATCCGGCAGTCCATTATATTTCTTTCTCTCGAAATTTTGGCAAAGAAGCA
    GCCCTTTATGCAGGCTTGCAATATGCGACAGGAGATTTGGTGGTGGTGATGGATGCAGAC
    CTCCAAGATCCTCCTAGTATGTTGTTTGAGATGAAAAATGTACTAGACAAAAATGTAGAC
    TTGGACTGCGTTGGGACACGGAGAACTAGTCGGGAGGGAGAACCCTTCTTTCGCAGTTTC
    TGTGCTGTTCTCTTTTATCGCCTCATGCAAAAAATCAGCCCAGTAGCTCTGCCGTCGGGT
    GTCCGTGATTTTCGTATGATGAGAAGGTCTGTGGTCGATGCCATTTTAAGCTTGACTGAG
    TCCAATCGTTTTTCTAAGGGACTCTTTGCCTGGGTCGGCTTTAAAACCCACTATCTGGAC
    TATCCAAATGTCGAAAGGCAGGCTGGCAAGACCAGTTGGAGTTTTAGGCAACTCTTTTTT
    TACTCCATTGAAGGGATTGTTAATTTTTCAGATTTCCCTTTGACTATAGCCTTTGTAGCT
    GGTCTCCTATCTTGTTTTCTTTCTCTGCTGATGACCTTTTTTGTTGTGGTTCGGACCCTC
    ATTTTGGGCAATCCGACATCTGGTTGGACCTCTCTGATGGCTGTTATTCTCTTTCTTGGA
    GGCATTCAACTCTTGACCATTGGGATTCTCGGTAAGTATATCAGTAAGATTTATTTAGAG
    ACTAAAAAAAGACCACTTTATCTTATCAAAGAAAAAAGTGACCTTCCTGATTTTACAGAA
    AAAATAAAGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    972

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPV_1431 [new locus tag: SPV_RS07600 ]
  • symbol: GtrB
  • description: Bactoprenol glucosyl transferase
  • length: 323
  • theoretical pI: 5.49796
  • theoretical MW: 36711.6
  • GRAVY: 0.197833

⊟Function[edit | edit source]

  • reaction:
    EC 2.4.1.-?  ExPASy
  • TIGRFAM:
    poly-beta-1,6 N-acetyl-D-glucosamine synthase (TIGR03937; EC 2.4.1.-; HMM-score: 57.5)
    Unknown function Enzymes of unknown specificity transferase 2, rSAM/selenodomain-associated (TIGR04283; EC 2.-.-.-; HMM-score: 46.2)
    and 11 more
    mycofactocin system glycosyltransferase (TIGR03965; HMM-score: 31.8)
    chitooligosaccharide synthase NodC (TIGR04242; EC 2.4.1.-; HMM-score: 29.6)
    colanic acid biosynthesis glycosyltransferase WcaE (TIGR04009; EC 2.4.-.-; HMM-score: 23.1)
    glycosyltransferase, TIGR04182 family (TIGR04182; HMM-score: 22.4)
    putative glycosyltransferase, exosortase G-associated (TIGR03111; HMM-score: 21.9)
    hopene-associated glycosyltransferase HpnB (TIGR03469; HMM-score: 15.3)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides rhamnosyltransferase (TIGR01556; EC 2.4.1.-; HMM-score: 15.2)
    glycosyltransferase domain (TIGR04440; EC 2.-.-.-; HMM-score: 13)
    colanic acid biosynthesis glycosyltransferase WcaA (TIGR04017; EC 2.4.-.-; HMM-score: 12.5)
    Cellular processes Cellular processes DNA transformation DNA protecting protein DprA (TIGR00732; HMM-score: 11.5)
    cellulose synthase catalytic subunit (UDP-forming) (TIGR03030; EC 2.4.1.12; HMM-score: 11)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    GT-A (CL0110) Glycos_transf_2; Glycosyl transferase family 2 (PF00535; HMM-score: 119.5)
    and 4 more
    Glyco_tranf_2_3; Glycosyltransferase like family 2 (PF13641; HMM-score: 48.8)
    Glyco_tranf_2_2; Glycosyltransferase like family 2 (PF10111; HMM-score: 28.3)
    Glyco_tranf_2_4; Glycosyl transferase family 2 (PF13704; HMM-score: 19.6)
    C_Lectin (CL0056) UL45; UL45 protein, carbohydrate-binding C-type lectin-like (PF05473; HMM-score: 13.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 9.99
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 2
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011258
    • TAT(Tat/SPI): 0.000209
    • LIPO(Sec/SPII): 0.001113
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: AVN86510 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MDLKTKMMISIIVPCLNEEEVLPLFYQALEALLPDLETEIEYVFVDDGSSDGTLELLKAYREQNPAVHYISFSRNFGKEAALYAGLQYATGDLVVVMDADLQDPPSMLFEMKNVLDKNVDLDCVGTRRTSREGEPFFRSFCAVLFYRLMQKISPVALPSGVRDFRMMRRSVVDAILSLTESNRFSKGLFAWVGFKTHYLDYPNVERQAGKTSWSFRQLFFYSIEGIVNFSDFPLTIAFVAGLLSCFLSLLMTFFVVVRTLILGNPTSGWTSLMAVILFLGGIQLLTIGILGKYISKIYLETKKRPLYLIKEKSDLPDFTEKIK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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