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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 06-SEP-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae D39V
  • locus tag: SPV_1754 [new locus tag: SPV_RS09340 ]
  • pan locus tag?: PNEUPAN003573000
  • symbol: sceB
  • pan gene symbol?: sceB
  • synonym:
  • product: (Putative) Streptococcin E immunity (possibly truncated)

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPV_1754 [new locus tag: SPV_RS09340 ]
  • symbol: sceB
  • product: (Putative) Streptococcin E immunity (possibly truncated)
  • replicon: chromosome
  • strand: +
  • coordinates: 1749441..1750196
  • length: 756
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP027540 (1749441..1750196) NCBI
  • BioCyc: SPV_1754 BioCyc
  • MicrobesOnline:
  • PneumoBrowse: SPV_1754 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGAATCACCTTGATGTAGGGGAGTTTGTCTTATTGCTGCCTGAACACCTCCGTTCAGAG
    GAAGAACATTATAAATCTGTTTTTGAAGACGACTTAACCAGTCGCATATCTAGTCAAGAT
    GAACGACAGCAAATGACTGCTACGGTAGGTTATTTAGAATCAGGTCAGGATCGTTTTGTG
    TATAATACGACCCCTATTTCTTACCAGCAGTTTTTGAAAGATCCAATCATCATTGTTATA
    ACACCCCAATCAACTGGTCCACAGTCCATTTTGTTTTGGATAGACGCAGTACAGAACTAC
    GTTCTCTTTAATCAATTGTCTGATGCCCAGGAGCTTATCCAGAGACAAGGCATTGAAAAT
    TGGGTCTCAGAAATGCAAACAGGTTACCACAACTACATCACATTATTGGATAATATCCAG
    AGGGAACGTTGGGTAATGCTAGCAGGAGCTGTGCTTGGGATTGCAACTTCAATCTTGTTG
    TTTAACACTATGAATAGGCTCTACTTTGAAGAATTTAGACGTGCCATTTTTATCAAACGC
    ATTGCAGGTCTCAGGTTCTTAGAAATCCATCGCACTTATCTCTTTGCTCAACTGGGTGTG
    TTTTTACTGGGATTTGTTGCGAGTGTATTTCTTCAGGTAGAGATAGGAGTTGCTTTCTTA
    GTCTTGTTACTCTTTACTGGTCTATCTCTTTTACAGTTACATGTCCAAATGCAGAAAGAA
    AACAAGATGTCCATGCTTGTTTTGAAGGGAGGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    756

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPV_1754 [new locus tag: SPV_RS09340 ]
  • symbol: SceB
  • description: (Putative) Streptococcin E immunity (possibly truncated)
  • length: 251
  • theoretical pI: 5.30431
  • theoretical MW: 29004.4
  • GRAVY: 0.151793

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Toxin production and resistance bacteriocin-associated integral membrane protein (TIGR01654; HMM-score: 126)
    and 1 more
    Metabolism Energy metabolism Other phosphoenolpyruvate carboxylase (TIGR02751; EC 4.1.1.31; HMM-score: 13.1)
  • TheSEED: data available for D39, TIGR4
  • PFAM:
    BPD_transp_1 (CL0404) DUF1430; Protein of unknown function (DUF1430) (PF07242; HMM-score: 94)
    and 1 more
    no clan defined DUF6637; Family of unknown function (DUF6637) (PF20342; HMM-score: 10.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.010482
    • TAT(Tat/SPI): 0.001728
    • LIPO(Sec/SPII): 0.000657
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: AVN86796 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNHLDVGEFVLLLPEHLRSEEEHYKSVFEDDLTSRISSQDERQQMTATVGYLESGQDRFVYNTTPISYQQFLKDPIIIVITPQSTGPQSILFWIDAVQNYVLFNQLSDAQELIQRQGIENWVSEMQTGYHNYITLLDNIQRERWVMLAGAVLGIATSILLFNTMNRLYFEEFRRAIFIKRIAGLRFLEIHRTYLFAQLGVFLLGFVASVFLQVEIGVAFLVLLLFTGLSLLQLHVQMQKENKMSMLVLKGG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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