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TIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 06-SEP-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae D39V
  • locus tag: SPV_2400
  • pan locus tag?:
  • symbol: SPV_2400
  • pan gene symbol?: —
  • synonym:
  • product: IS1167 transposase Orf1

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPV_2400
  • symbol: SPV_2400
  • product: IS1167 transposase Orf1
  • replicon: chromosome
  • strand: +
  • coordinates: 1655544..1656062
  • length: 519
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP027540 (1655544..1656062) NCBI
  • BioCyc: SPV_2400 BioCyc
  • MicrobesOnline:
  • PneumoBrowse: SPV_2400 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGGAACAATTACATTTTATCACAAAATTACTAGACATTAAAGACCCTAATATCCAGATT
    TTAGACATCATCAATAAGGATACACACAAGGAAATCATCGCCAAACTGGACTACGACGCC
    CCATCTTGCCCTGAGTGCGGAAACCAATTGAAGAAATATGACTTTCAAAAACCGTCTAAG
    ATCCCTTACCTCGAAACAACTGGTATGCCTTCTAGAATTCTCCTTAGAAAACGCCGTTTC
    AAGTGCTATCACTGTTCAAAAATGATGGTCGCTGAAACTTCTATCGTCAAGAAGAATCAT
    CAAATTCCTCGTATTATCAACCAAAAAATTGCGCAAAAGTTGATTGAGAAGATTTCTATG
    ACCGATATTGCTCATCAGCTGGCCATTTCAACTTCAACTGTCATTCGCAAGCTCAATGAT
    TCTCACTTTGAGCATGATTTTTCGCGTCTTCCTGAGATTATGTCCTGGGACGTTGAAACA
    GTCCGGGGAGTGACTGTTTCAATCGGGAGATGGAGATGA
    60
    120
    180
    240
    300
    360
    420
    480
    519

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPV_2400
  • symbol: SPV_2400
  • description: IS1167 transposase Orf1
  • length: 172
  • theoretical pI: 9.84209
  • theoretical MW: 20087.4
  • GRAVY: -0.410465

⊟Function[edit | edit source]

  • TIGRFAM:
    Signal transduction Regulatory functions DNA interactions CRISPR locus-related DNA-binding protein (TIGR01884; HMM-score: 12.4)
    and 1 more
    DNA-directed RNA polymerase subunit A' (TIGR02390; EC 2.7.7.6; HMM-score: 9.3)
  • TheSEED:
  • PFAM:
    Zn_Beta_Ribbon (CL0167) zf-ISL3; zinc-finger of transposase IS204/IS1001/IS1096/IS1165 (PF14690; HMM-score: 43.4)
    HTH (CL0123) HTH_Tnp_ISL3; Helix-turn-helix domain of transposase family ISL3 (PF13542; HMM-score: 38.6)
    and 18 more
    Zn_Beta_Ribbon (CL0167) Zn_Tnp_IS1595; Transposase zinc-ribbon domain (PF12760; HMM-score: 22.8)
    HTH (CL0123) HTH_7; Helix-turn-helix domain of resolvase (PF02796; HMM-score: 16.1)
    Zn_Beta_Ribbon (CL0167) DZR; Double zinc ribbon (PF12773; HMM-score: 15.8)
    HTH (CL0123) HTH_AsnC-type; AsnC-type helix-turn-helix domain (PF13404; HMM-score: 15.5)
    no clan defined DUF6431; Domain of unknown function (DUF6431) (PF20020; HMM-score: 15.1)
    HTH (CL0123) Mga; Mga helix-turn-helix domain (PF05043; HMM-score: 14.2)
    HTH_23; Homeodomain-like domain (PF13384; HMM-score: 14.2)
    no clan defined TnsD; Tn7-like transposition protein D (PF15978; HMM-score: 14.2)
    C2H2-zf (CL0361) zf-C2HE; C2HE / C2H2 / C2HC zinc-binding finger (PF16278; HMM-score: 13.9)
    HTH (CL0123) HTH_11; HTH domain (PF08279; HMM-score: 13.7)
    HTH_24; Winged helix-turn-helix DNA-binding (PF13412; HMM-score: 13)
    no clan defined BLYB; Borrelia hemolysin accessory protein (PF05289; HMM-score: 12.9)
    Zn_Beta_Ribbon (CL0167) zinc_ribbon_9; zinc-ribbon (PF14369; HMM-score: 12.9)
    TRAF (CL0389) zf-ACC; Acetyl-coA carboxylase zinc finger domain (PF17848; HMM-score: 12.8)
    Zn_Beta_Ribbon (CL0167) zf-ribbon_3; zinc-ribbon domain (PF13248; HMM-score: 12.5)
    HTH (CL0123) HTH_AraC; Bacterial regulatory helix-turn-helix proteins, AraC family (PF00165; HMM-score: 12.1)
    HTH_IclR; IclR helix-turn-helix domain (PF09339; HMM-score: 11.6)
    HTH_6; Helix-turn-helix domain, rpiR family (PF01418; HMM-score: 9.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.7845
    • Cytoplasmic Membrane Score: 0.0105
    • Cell wall & surface Score: 0.0106
    • Extracellular Score: 0.1943
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.026841
    • TAT(Tat/SPI): 0.000229
    • LIPO(Sec/SPII): 0.000731
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: AVN86712 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MEQLHFITKLLDIKDPNIQILDIINKDTHKEIIAKLDYDAPSCPECGNQLKKYDFQKPSKIPYLETTGMPSRILLRKRRFKCYHCSKMMVAETSIVKKNHQIPRIINQKIAQKLIEKISMTDIAHQLAISTSTVIRKLNDSHFEHDFSRLPEIMSWDVETVRGVTVSIGRWR

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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