Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 08-SEP-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae D39V
- locus tag: SPV_RS01455 [old locus tag: SPV_0267 ]
- pan locus tag?: PNEUPAN001025000
- symbol: SPV_RS01455
- pan gene symbol?: pbuO
- synonym:
- product: NCS2 family permease
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPV_RS01455 [old locus tag: SPV_0267 ]
- symbol: SPV_RS01455
- product: NCS2 family permease
- replicon: chromosome
- strand: +
- coordinates: 266224..267642
- length: 1419
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_CP027540 (266224..267642) NCBI
- BioCyc: see SPV_0267
- MicrobesOnline:
- PneumoBrowse: SPV_0267 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381ATGGACAAATTATTTAAACTAAAAGAGAACGGTACAGACGTTCGTACAGAGGTTCTCGCT
GGTTTAACAACTTTCTTTGCAATGAGCTATATTCTCTTTGTAAACCCACAAATACTTTCA
CAAACAGGAATGCCTGCTCAGGGTGTCTTCCTAGCGACGATTATTGGTGCAGTAGCGGGT
ACCTTGATGATGGCTTTTTATGCTAACTTACCTTATGCCCAAGCGCCAGGTATGGGACTC
AATGCCTTCTTTACCTTTACAGTTGTATTCGGGCTTGGTTATTCTTGGCAAGAAGCCCTA
GCTATGGTCTTCATCTGTGGGATTATTTCATTGATTATTACCTTGACAAATGTTCGTAAA
ATGATCATTGAATCGATTCCCAATGCTCTTCGCTCAGCTATTTCAGCTGGTATCGGTGTC
TTCCTTGCCTATGTAGGGATTAAGAATGCTGGACTTTTGAAATTCACGATTGATCCAGGC
AACTATACTGTTGTAGGAGAAGGGGCTGACAAAGCTCAAGCAACGATTGCAGCAAACTCT
TCAGCAGTTCCAGGATTGGTCAGCTTTAATAATCCAGCTGTTTTAGTGGCTCTTGCAGGA
CTTGCCATTACTATCTTCTTTGTCATCAAAGGGATTAAAGGGGGAATTATTCTCTCTATC
TTGACAACAACTGTTCTTGCTATTGCAGTTGGTTTGGTTGATTTGTCTAGTATCGATTTT
GCTAATAACCATGTTGGTGCAGCTTTTGAAGATTTGAAGACAATCTTTGGTGCAGCTCTT
GGTTCAGAAGGTTTGGGAGCTTTGGTTTCAGATACAGCTCGCTTGCCTGAAACTCTGATG
GCCATTCTTGCCTTCTCATTGACAGATATTTTTGACACAATTGGTACCTTGATCGGTACA
GGTGAAAAAGTTGGTATCGTAGCGACAAATGGTGAAAATCACCAATCAGCCAAATTGGAT
AAGGCTCTTTACTCTGATTTGATTGGAACGACAGTCGGTGCCATTGCAGGTACTTCAAAC
GTAACGACTTATGTTGAGTCTGCTGCTGGTATCGGTGCAGGTGGACGTACTGGTTTGACA
GCCTTGGTTGTAGCTATCTGTTTTGCGATTTCAAGCTTCTTTAGCCCACTTCTAGCGATC
GTACCAACAGCGGCTACAGCTCCAATCTTGATTATCGTTGGGATTATGATGCTTGGTAGC
TTGAAAAATATCCATTGGGATGATATGTCTGAAGCAGTTCCTGCCTTCTTCACATCTATC
TTTATGGGATTCAGCTACTCTATCACTCAAGGGATTGCAGTTGGTTTCTTGACTTACACT
TTGACTAAGCTTGTTAAAGGTCAAGTTAAAGATGTTCATGTCATGATTTGGATTTTGGAT
GCCTTGTTTATCCTTAACTACATCAGCATGGCCTTATAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1080
1140
1200
1260
1320
1380
1419
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPV_RS01455 [old locus tag: SPV_0267 ]
- symbol: SPV_RS01455
- description: NCS2 family permease
- length: 472
- theoretical pI: 5.08268
- theoretical MW: 49253.6
- GRAVY: 0.863136
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: APC (CL0062) Xan_ur_permease; Permease family (PF00860; HMM-score: 138.2)and 1 moreHTH (CL0123) MC7; ABC-three component (ABC-3C) system Middle Component 7 (PF20292; HMM-score: 18.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 11
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9995
- Cell wall & surface Score: 0
- Extracellular Score: 0.0005
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.020791
- TAT(Tat/SPI): 0.00048
- LIPO(Sec/SPII): 0.006601
- predicted transmembrane helices (TMHMM): 11
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000359282 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MDKLFKLKENGTDVRTEVLAGLTTFFAMSYILFVNPQILSQTGMPAQGVFLATIIGAVAGTLMMAFYANLPYAQAPGMGLNAFFTFTVVFGLGYSWQEALAMVFICGIISLIITLTNVRKMIIESIPNALRSAISAGIGVFLAYVGIKNAGLLKFTIDPGNYTVVGEGADKAQATIAANSSAVPGLVSFNNPAVLVALAGLAITIFFVIKGIKGGIILSILTTTVLAIAVGLVDLSSIDFANNHVGAAFEDLKTIFGAALGSEGLGALVSDTARLPETLMAILAFSLTDIFDTIGTLIGTGEKVGIVATNGENHQSAKLDKALYSDLIGTTVGAIAGTSNVTTYVESAAGIGAGGRTGLTALVVAICFAISSFFSPLLAIVPTAATAPILIIVGIMMLGSLKNIHWDDMSEAVPAFFTSIFMGFSYSITQGIAVGFLTYTLTKLVKGQVKDVHVMIWILDALFILNYISMAL
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress: SPV_0267 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.