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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TIGR4
- locus tag: SP_0181 [new locus tag: SP_RS00900 ]
- pan locus tag?: PNEUPAN000904000
- symbol: SP_0181
- pan gene symbol?: —
- synonym:
- product: conserved hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP_0181 [new locus tag: SP_RS00900 ]
- symbol: SP_0181
- product: conserved hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 173006..173683
- length: 678
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE005672 (173006..173683) NCBI
- BioCyc:
- MicrobesOnline: 115721 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0172 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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661ATGATGTCTAACAAAAATAAGGAAATTCTGATTTTTGCGATTCTCTATACAGTCCTCTTT
ATGTTTGATGGCGTTAAATTGCTGGCTTCTTTAATGCCATCTGCCATTGCAAATTATCTT
GTTTATGTAGTTTTAGCTCTATATGGCTCCTTCTTGTTCAAGGATAGATTGATCCAACAA
TGGAAGGAGATTAGAAAGACTAAAAGAAAATTCTTCTTTGGAGTCTTAACAGGATGGCTC
TTTCTCATTCTGATGACTGTTGTCTTTGAATTTGTATCAGAGATGTTGAAGCAGTTTGTG
GGACTAGATGGACAAGGTCTAAATCAGTCTAATATTCAAAGTACCTTTCAAGAACAACCA
CTACTGATAGCTGTTTTTGCTTGTGTCATTGGACCTCTGGTAGAAGAATTATTTTTCCGT
CAGGTCTTATTGCATTACTTGCAGGAACGGTTGTCAGGTTTACTAAGCATTATTCTGGTA
GGACTTGTTTTTGCTCTGACTCATATGCACAGTTTGGCTCTATCAGAGTGGATTGGTGCA
GTTGGTTACTTAGGTGGAGGCCTTGCCTTTTCTATTATTTATGTGAAAGAAAAAGAGAAT
ATCTACTATCCCCTACTTGTTCACATGTTAAGCAACAGCCTCTCCTTAATCATTTTAGCT
ATCAGTATAGTAAAATGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP_0181 [new locus tag: SP_RS00900 ]
- symbol: SP_0181
- description: conserved hypothetical protein
- length: 225
- theoretical pI: 9.22076
- theoretical MW: 25542.5
- GRAVY: 0.822667
⊟Function[edit | edit source]
- TIGRFAM: Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides CAAX prenyl protease-related protein (TIGR03008; HMM-score: 25.7)
- TheSEED :
- CAAX amino terminal protease family protein
- PFAM: Peptidase_U (CL0472) Rce1-like; Type II CAAX prenyl endopeptidase Rce1-like (PF02517; HMM-score: 60.6)and 3 moreno clan defined NDUF_B4; NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4) (PF07225; HMM-score: 11.6)SLATT (CL0676) DUF4231; Protein of unknown function (DUF4231) (PF14015; HMM-score: 10.9)no clan defined DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 4.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 7
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0002
- Cytoplasmic Membrane Score: 0.9974
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0023
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.035236
- TAT(Tat/SPI): 0.001143
- LIPO(Sec/SPII): 0.005467
- predicted transmembrane helices (TMHMM): 7
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MMSNKNKEILIFAILYTVLFMFDGVKLLASLMPSAIANYLVYVVLALYGSFLFKDRLIQQWKEIRKTKRKFFFGVLTGWLFLILMTVVFEFVSEMLKQFVGLDGQGLNQSNIQSTFQEQPLLIAVFACVIGPLVEELFFRQVLLHYLQERLSGLLSIILVGLVFALTHMHSLALSEWIGAVGYLGGGLAFSIIYVKEKENIYYPLLVHMLSNSLSLIILAISIVK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: ruvA > tag > SP_0181
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0172 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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