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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae TIGR4
  • locus tag: SP_0484 [new locus tag: SP_RS02395 ]
  • pan locus tag?: PNEUPAN001366000
  • symbol: SP_0484
  • pan gene symbol?: mtsC
  • synonym:
  • product: cobalt transport protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP_0484 [new locus tag: SP_RS02395 ]
  • symbol: SP_0484
  • product: cobalt transport protein
  • replicon: chromosome
  • strand: +
  • coordinates: 465572..466402
  • length: 831
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGCAAGCTAAATTAATCGGTTACCAGCATAGAGATACTGTGATTCATCGCTTGTCAGGA
    GCTGGGAAACTTCTCTTTTTCATTCTGGTATCATTGGCGGCCATGATTAGCTATGATACC
    AGAATGCTCTTGCTGATTGCCATCTTTTCAGTCTTTCTCCTCTATTTATCAGAAATTCGC
    TTTAAAGATGTTTCCTTTGTAGCCGTTTTTGCGACGATATTTGCCGTTTTAAACGTTTTG
    ATGGTCTATCTCTTTTCTCCCGAGTATGGGGTTGGACTTTATGGAGAGAGAAGTGTGATT
    TGGCAGGGAATCGGTGTCTACACTCTAACCAGCCAGGAGCTCTTTTATCTGCTAAATTTG
    GCCATTAAGTATCTTTGCACCATTCCTCTGGCTATTATCTTTTTGATGACAACCCATCCT
    AGTCAGTTTGCTTCCAGTTTAAATCAAATTGGTGTGCCCTATAAGATTGCTTATTCTGTC
    AGCCTGACCTTGCGCTATATTCCAGATTTGCAGGAAGAATTCTTTACTATCAAGATGTCT
    CAGGAGGCGCGTGGGATGGAATTATCCAAGAAAGCTTCTCTTATGCAACGAATCAAAGGC
    AATCTGCTCATTATTACGCCCTTGATTTTTAGCTCGCTAGAACGCATTGATACCATTGCG
    ACTGCCATGGAGCTTCGCCGCTTTGGGAAAGAGAAAAAACGCACATGGTATAGTTATCAG
    GCCTTGAAAAAAGGAGACTATATTACCTTGCTCTTGGCAACCTTGTTTTTAGTAGTTAGT
    TTACTACTTATCTTGCAGAATCAGGGACGATTTTACAACCCTTGGAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    831

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP_0484 [new locus tag: SP_RS02395 ]
  • symbol: SP_0484
  • description: cobalt transport protein
  • length: 276
  • theoretical pI: 9.99205
  • theoretical MW: 31642.5
  • GRAVY: 0.507971

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds cobalt ECF transporter T component CbiQ (TIGR02454; HMM-score: 72.8)
  • TheSEED  :
    • Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
    Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Methionine Biosynthesis  Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
    and 1 more
    Membrane Transport Membrane Transport - no subcategory ECF class transporters  Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
  • PFAM:
    no clan defined CbiQ; Cobalt transport protein (PF02361; HMM-score: 108)
    and 2 more
    DUF202; Domain of unknown function (DUF202) (PF02656; HMM-score: 8.1)
    DUF6594; Family of unknown function (DUF6594) (PF20237; HMM-score: 7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002664
    • TAT(Tat/SPI): 0.00022
    • LIPO(Sec/SPII): 0.008895
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQAKLIGYQHRDTVIHRLSGAGKLLFFILVSLAAMISYDTRMLLLIAIFSVFLLYLSEIRFKDVSFVAVFATIFAVLNVLMVYLFSPEYGVGLYGERSVIWQGIGVYTLTSQELFYLLNLAIKYLCTIPLAIIFLMTTHPSQFASSLNQIGVPYKIAYSVSLTLRYIPDLQEEFFTIKMSQEARGMELSKKASLMQRIKGNLLIITPLIFSSLERIDTIATAMELRRFGKEKKRTWYSYQALKKGDYITLLLATLFLVVSLLLILQNQGRFYNPWK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: MtaR* (repression) regulon
    MtaR*(TF)important in Methionine metabolism; RegPrecise 

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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