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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae TIGR4
  • locus tag: SP_0835 [new locus tag: SP_RS04085 ]
  • pan locus tag?: PNEUPAN001784000
  • symbol: SP_0835
  • pan gene symbol?: deoD
  • synonym:
  • product: purine nucleoside phosphorylase, family 1

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP_0835 [new locus tag: SP_RS04085 ]
  • symbol: SP_0835
  • product: purine nucleoside phosphorylase, family 1
  • replicon: chromosome
  • strand: +
  • coordinates: 783653..784363
  • length: 711
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGTCTATCCATATTGCTGCTCAGCAGGGTGAAATTGCTGATAAAATTCTTCTTCCTGGG
    GATCCTCTTCGTGCTAAGTTTATTGCGGAGAATTTCCTTGATGATGCTGTTTGTTTTAAC
    GAAGTGCGTAACATGTTTGGTTACACTGGTACTTACAAGGGTCACTGTGTATCTGTCATG
    GGAACTGGGATGGGAATGCCATCTATTTCGATTTATGCGCGTGAGTTAATCGTAGACTAC
    GGTGTGAAGAAATTGATTCGTGTGGGAACTGCAGGTTCTTTGAATGAAGAGGTTCATGTT
    CGTGAATTAGTTTTGGCGCAGGCGGCTGCAACCAACTCAAACATCGTTCGTAATGACTGG
    CCACAGTACGATTTTCCACAAATTGCTAGCTTTGATTTGCTTGATAAAGCCTACCATATC
    GCCAAAAAACTTGGTATGACTACTCACGTTGGGAACGTTTTGTCATCTGATGTCTTTTAC
    TCAAATTACTTTGAAAAGAATATCGAGCTTGGTAAATGGGGAGTCAAGGCTGTGGAAATG
    GAAGCAGCAGCTCTTTACTATCTTGCTGCCCAATACCATGTTGATGCGCTAGCTATCATG
    ACCATCTCTGATAGCTTGGTCAATCCAGACGAAGACACAACTGCAGAAGAACGTCAAAAT
    ACCTTCACTGATATGATGAAGGTTGGTTTGGAAACCTTGATTGCAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    711

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP_0835 [new locus tag: SP_RS04085 ]
  • symbol: SP_0835
  • description: purine nucleoside phosphorylase, family 1
  • length: 236
  • theoretical pI: 4.63046
  • theoretical MW: 26129.7
  • GRAVY: -0.00550847

⊟Function[edit | edit source]

  • reaction:
    EC 2.4.2.1?  ExPASy
    Purine-nucleoside phosphorylase Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate
  • TIGRFAM:
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Salvage of nucleosides and nucleotides purine nucleoside phosphorylase (TIGR00107; EC 2.4.2.1; HMM-score: 289.9)
    and 7 more
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Salvage of nucleosides and nucleotides uridine phosphorylase (TIGR01718; EC 2.4.2.3; HMM-score: 119.4)
    futalosine hydrolase (TIGR03664; EC 3.2.2.26; HMM-score: 34)
    hopanoid-associated phosphorylase (TIGR03468; HMM-score: 33.5)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Salvage of nucleosides and nucleotides MTA/SAH nucleosidase (TIGR01704; EC 3.2.2.16,3.2.2.9; HMM-score: 28.6)
    Metabolism Central intermediary metabolism Other MTA/SAH nucleosidase (TIGR01704; EC 3.2.2.16,3.2.2.9; HMM-score: 28.6)
    putative AMP nucleosidase (TIGR01721; HMM-score: 24.3)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Salvage of nucleosides and nucleotides uridine phosphorylase (TIGR01719; EC 2.4.2.3; HMM-score: 23)
  • TheSEED  :
    • Purine nucleoside phosphorylase (EC 2.4.2.1)
    Carbohydrates Monosaccharides Deoxyribose and Deoxynucleoside Catabolism  Purine nucleoside phosphorylase (EC 2.4.2.1)
    and 2 more
    Nucleosides and Nucleotides Purines Purine conversions  Purine nucleoside phosphorylase (EC 2.4.2.1)
    Nucleosides and Nucleotides Pyrimidines pyrimidine conversions  Purine nucleoside phosphorylase (EC 2.4.2.1)
  • PFAM:
    PUP (CL0408) PNP_UDP_1; Phosphorylase superfamily (PF01048; HMM-score: 144)
    and 2 more
    Glyco_hydro_tim (CL0058) DUF4434; Domain of unknown function (DUF4434) (PF14488; HMM-score: 20.2)
    PepSY (CL0320) DUF4309; Domain of unknown function (DUF4309) (PF14172; HMM-score: 13.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.987
    • Cytoplasmic Membrane Score: 0.0016
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0114
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.06764
    • TAT(Tat/SPI): 0.00076
    • LIPO(Sec/SPII): 0.000892
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSIHIAAQQGEIADKILLPGDPLRAKFIAENFLDDAVCFNEVRNMFGYTGTYKGHCVSVMGTGMGMPSISIYARELIVDYGVKKLIRVGTAGSLNEEVHVRELVLAQAAATNSNIVRNDWPQYDFPQIASFDLLDKAYHIAKKLGMTTHVGNVLSSDVFYSNYFEKNIELGKWGVKAVEMEAAALYYLAAQYHVDALAIMTISDSLVNPDEDTTAEERQNTFTDMMKVGLETLIAE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Indu Warrier, Nikhil Ram-Mohan, Zeyu Zhu, Ariana Hazery, Haley Echlin, Jason Rosch, Michelle M Meyer, Tim van Opijnen
    The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence.
    PLoS Pathog: 2018, 14(12);e1007461
    [PubMed:30517198] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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