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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TIGR4
- locus tag: SP_1286 [new locus tag: SP_RS06305 ]
- pan locus tag?: PNEUPAN002566000
- symbol: uraA
- pan gene symbol?: uraA
- synonym:
- product: uracil permease
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP_1286 [new locus tag: SP_RS06305 ]
- symbol: uraA
- product: uracil permease
- replicon: chromosome
- strand: +
- coordinates: 1220466..1221785
- length: 1320
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE005672 (1220466..1221785) NCBI
- BioCyc:
- MicrobesOnline: 116749 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_1141 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1261ATGGGCTCTTTTTTGATGCCCAAAAGTGAGGTTTATATGAAACAAGAATCAACTGTTGAT
TTGTTACTAGACGTTGACCAACGTCCTTCGGCTGGAAAAGGAATTCTCCTTAGTTTCCAA
CACGTTTTCGCCATGTTTGGTGCGACCATCTTGGTACCATTGATTTTGGGAATGCCTGTA
TCTGTTGCCCTTTTTGCTTCAGGTGTTGGAACACTCATCTACATGATTGCTACTGGTTTT
AAAGTTCCAGTTTATCTAGGTTCTTCATTTGCCTTTATCACAGCTATGTCACTGGCTATG
AAAGAAATGGGGGGGGATGTATCTGCTGCCCAAACAGGGGTTATCTTGACTGGTTTGGTC
TATGTCCTTGTTGCTACCAGCATCCGATTTGTAGGAACAAAATGGATTGATAAACTCTTG
CCACCAATCATTATCGGTCCTATGATCATCGTTATCGGTCTTGGACTTGCAGGTTCAGCT
GTTACCAATGCAGGTCTTGTAGCAGACGGAAATTGGAAAAATGCTCTGGTAGCCGTTGTT
ACTTTCCTAATTGCTGCCTTTATCAATACAAAAGGAAAAGGCTTCCTACGAATCATTCCA
TTCCTCTTTGCCATTATCGGTGGTTACCTTTTCGCACTAACTCTTGGCTTGGTTGACTTT
ACACCAGTTCTTAAAGCCAACTGGTTCGAAATTCCTGGTTTCTACTTGCCATTTAGCACA
GGTGGTGCCTTTAAAGAGTACAATCTTTACTTTGGTCCAGAAGCCATCGCTATCTTGCCA
ATCGCTATCGTAACAATTTCTGAACATATCGGAGACCATACTGTTTTGGGTCAAATCTGT
GGTCGTCAATTCTTAAAAGAACCAGGTCTTCACCGTACTCTTCTTGGTGACGGTATCGCA
ACTTCTGTTTCTGCCTTCCTTGGTGGACCAGCCAATACAACTTACGGAGAAAATACAGGG
GTTATCGGTATGACTCGTATCGCTTCTGTCTCAGTTATCCGTAACGCTGCCTTCATCGCG
ATTGCCCTCAGCTTCCTTGGTAAATTCACTGCCTTGATTTCAACTATTCCAAACGCTGTA
CTTGGTGGTATGTCAATCCTTCTCTATGGGGTTATCGCCAGCAATGGTTTGAAAGTCTTG
ATTAAAGAACGTGTTGATTTCGCTCAAATGCGAAACCTCATCATCGCAAGTGCTATGTTG
GTTCTTGGACTTGGAGGAGCTATCCTTAAACTTGGTCCAGTTACACTTTCAGGTACTGCC
CTTTCAGCCATGACAGGAATCATCTTGAACTTGATCTTGCCATACGAAAATAAAGACTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP_1286 [new locus tag: SP_RS06305 ]
- symbol: UraA
- description: uracil permease
- length: 439
- theoretical pI: 9.52009
- theoretical MW: 46172.7
- GRAVY: 0.870615
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Nucleosides, purines and pyrimidines uracil-xanthine permease (TIGR00801; HMM-score: 372.2)and 2 morepyrimidine utilization transport protein G (TIGR03616; HMM-score: 270.2)xanthine permease (TIGR03173; HMM-score: 197.6)
- TheSEED :
- Uracil permease
- PFAM: APC (CL0062) Xan_ur_permease; Permease family (PF00860; HMM-score: 301.8)and 1 moreLisH (CL0561) LisH_TPL; LisH-like dimerisation domain (PF17814; HMM-score: 12.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 11
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9988
- Cell wall & surface Score: 0
- Extracellular Score: 0.0012
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.015906
- TAT(Tat/SPI): 0.000674
- LIPO(Sec/SPII): 0.001207
- predicted transmembrane helices (TMHMM): 10
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MGSFLMPKSEVYMKQESTVDLLLDVDQRPSAGKGILLSFQHVFAMFGATILVPLILGMPVSVALFASGVGTLIYMIATGFKVPVYLGSSFAFITAMSLAMKEMGGDVSAAQTGVILTGLVYVLVATSIRFVGTKWIDKLLPPIIIGPMIIVIGLGLAGSAVTNAGLVADGNWKNALVAVVTFLIAAFINTKGKGFLRIIPFLFAIIGGYLFALTLGLVDFTPVLKANWFEIPGFYLPFSTGGAFKEYNLYFGPEAIAILPIAIVTISEHIGDHTVLGQICGRQFLKEPGLHRTLLGDGIATSVSAFLGGPANTTYGENTGVIGMTRIASVSVIRNAAFIAIALSFLGKFTALISTIPNAVLGGMSILLYGVIASNGLKVLIKERVDFAQMRNLIIASAMLVLGLGGAILKLGPVTLSGTALSAMTGIILNLILPYENKD
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: pyrR leader (transcription antitermination) regulon
pyrR leader (RNA) important in Pyrimidine metabolism; RegPrecise
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1141 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Indu Warrier, Nikhil Ram-Mohan, Zeyu Zhu, Ariana Hazery, Haley Echlin, Jason Rosch, Michelle M Meyer, Tim van Opijnen
The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence.
PLoS Pathog: 2018, 14(12);e1007461
[PubMed:30517198] [WorldCat.org] [DOI] (I e)