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TIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TIGR4
- locus tag: SP_1302
- pan locus tag?:
- symbol: SP_1302
- pan gene symbol?: —
- synonym:
- product: conserved hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP_1302
- symbol: SP_1302
- product: conserved hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1231825..1232076
- length: 252
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE005672 (1231825..1232076) NCBI
- BioCyc:
- MicrobesOnline: 116764 MicrobesOnline
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241ATGGGCAAATCTTATAAAGAGATTATAGAGCTTTTAGACTGTAATCAAACAACGATTTGG
CGAAACGTAAAAAAATATGAGGAGTTCGGACTCGACTCTCTCCTTCAAGAAACACGTGGT
GGTCGTAACCATGCATATATGACAGTTGAGGAAGAGAAAGCCTTTCTTGCCCGTCATTTG
AAGGCTACAGAGGCAGGAGAATTTGTTACAATTGATGCCTTATTTCAGGTTTATAAAAAG
GAGTGTGGATGA60
120
180
240
252
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP_1302
- symbol: SP_1302
- description: conserved hypothetical protein
- length: 83
- theoretical pI: 5.7361
- theoretical MW: 9634.92
- GRAVY: -0.528916
⊟Function[edit | edit source]
- TIGRFAM: Regulatory functions DNA interactions biotin operon repressor (TIGR00122; HMM-score: 12.4)choice-of-anchor B domain (TIGR04312; HMM-score: 11.7)
- TheSEED :
- Mobile element protein
- PFAM: HTH (CL0123) HTH_23; Homeodomain-like domain (PF13384; HMM-score: 30.9)HTH_28; Helix-turn-helix domain (PF13518; HMM-score: 25.2)and 5 moreHTH_29; Winged helix-turn helix (PF13551; HMM-score: 17.6)HTH_32; Homeodomain-like domain (PF13565; HMM-score: 16.7)HTH_11; HTH domain (PF08279; HMM-score: 14.7)HTH_38; Helix-turn-helix domain (PF13936; HMM-score: 13.5)Terminase_5; Putative ATPase subunit of terminase (gpP-like) (PF06056; HMM-score: 12.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9346
- Cytoplasmic Membrane Score: 0.014
- Cell wall & surface Score: 0.008
- Extracellular Score: 0.0434
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002449
- TAT(Tat/SPI): 0.00017
- LIPO(Sec/SPII): 0.000396
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MGKSYKEIIELLDCNQTTIWRNVKKYEEFGLDSLLQETRGGRNHAYMTVEEEKAFLARHLKATEAGEFVTIDALFQVYKKECG
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]