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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae TIGR4
  • locus tag: SP_1553 [new locus tag: SP_RS07660 ]
  • pan locus tag?: PNEUPAN002840000
  • symbol: SP_1553
  • pan gene symbol?: ABC-NBD_16
  • synonym:
  • product: ABC transporter, ATP-binding protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP_1553 [new locus tag: SP_RS07660 ]
  • symbol: SP_1553
  • product: ABC transporter, ATP-binding protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1462632..1464503
  • length: 1872
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGAGTGATTTTATCGTTGAAAAACTAAGTAAATCCGTTGGTGACAAGACCGTTTTTAGG
    GATATTTCCTTTATTATCCATGACTTAGACAGAATTGGTTTAATCGGTGTCAATGGGACT
    GGCAAGACCACCCTTTTGGACGTCCTTTCTGGTGTTTCTGGATTTGATGGGGATGTCAGT
    CCTTTTTCAGCTAAAAATGATTACCAGATTGGTTACTTGACTCAGGATCCTGATTTTGAT
    GATAGAAAGACAGTTTTGGATACGGTTCTATCTAGTGAACTCAAGGAAATCCAGCTCATT
    CGTGAGTATGAATTGATTATGCTCGACTATAGTGAGGACAAGCAGGCGCGTTTGGAACGT
    GTCATGGCAGAGATGGACTCTCTCCAAGCTTGGGAAATCGAAAGTCAGGTCAAGACCGTT
    CTTAGCAAATTGGGCATTCAAGACTTATCTACTCCTGTTGGGGAATTGTCAGGTGGTCTG
    AGAAGACGGGTACAGTTGGCACAAGTCTTACTTGGCAACCACGACCTCTTGCTTTTGGAT
    GAGCCGACCAACCATCTGGATATTGCGATTATTGAGTGGCTGACCCTCTTTTTGAAAAAT
    TCTAAGAAGACCGTCCTTTTTATCACTCACGATCGTTATTTCTTAGACGCTTTGTCAACA
    CGGATTTTCGAGTTGGATCGTGCAGGCTTGACCGAGTACCAGGGAAATTACCAGGACTAT
    GTTCGCCTAAAGGCGGAACAGGATGAGCGCGACGCGGCTCTTCTTCACAAAAAAGAACAA
    CTCTACAAACAAGAATTGGCCTGGATGCGCAGACAACCGCAGGCGCGTGCGACCAAGCAA
    CAAGCTCGTATCAATCGTTTCCATGATCTGAAAAAGGAAGTTTCAGGCAGTAGTGCTGAG
    ACAGACTTGACTATGAACTTTGAAACCAGTCGGATTGGGAAGAAAGTCATCGAGTTTCAG
    GATGTTTCCTTTGCCTATGAAAATAAGCCCATTTTGCAAAATTTTAATCTCTTAGTTCAG
    GCTAAAGACCGTATTGGAATTGTTGGGGACAATGGTGTTGGAAAATCAACCCTACTTAAC
    CTGATTGCAGGAAGTCTTGAGCCGACAGCAGGACAAGTTGTGATTGGGGAAACTGTTCGC
    ATCGCCTATTTCTCTCAACAAATTGAGGGTTTGGATGAAAGCAAGCGTGTGATCAATTAC
    CTGCAGGAAGTGGCAGAGGAGGTCAAGACCAGTGGTGGTTCTACGACTTCCATCGCTGAG
    TTGCTGGAGCAATTCCTCTTCCCACGTTCGACGCATGGGACTTTGATTGAGAAATTGTCA
    GGGGGTGAGAAAAAACGTCTTTATCTCCTCAAACTGCTTTTGGAAAAACCAAATGTTCTT
    CTTTTAGACGAGCCAACCAATGACCTAGATATTGCAACTTTGACAGTCTTAGAGAATTTC
    TTGCAAGGTTTTGCAGGTCCCGTTTTAACAGTCAGTCACGACCGCTATTTCTTGGATAAG
    GTAGCGACCAAGATTCTCGCTTTTGAGGATGGCAAGATTCGTCCTTTCTTTGGTCATTAC
    ACCGACTATCTTGATGAAAAAGCTTTTGAAACAGATATGGCCAATCAAGTGCAAAAGGCC
    GAAAAGGAAAAAGTGGTCAAGGTTCGAGAAGACAAGAAACGCATGACCTACCAAGAAAAG
    CAGGAGTGGGCAAGTATTGAAGGTGATATTGAAACCTTGGAAAAACGTATCGCTGCTATT
    GAAGAGGAAATGCAGGCTAACGGCTCTGACTTTGGTAAGCTGGCTACTCTCCAAAAAGAA
    TTGGATGAGAAAAATGAAGCACTCCTTGAAAAATACGAACGCTATGAGTATCTCAGTGAA
    TTTGATAGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1872

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP_1553 [new locus tag: SP_RS07660 ]
  • symbol: SP_1553
  • description: ABC transporter, ATP-binding protein
  • length: 623
  • theoretical pI: 4.70594
  • theoretical MW: 70921
  • GRAVY: -0.385393

⊟Function[edit | edit source]

  • TIGRFAM:
    ATP-binding cassette protein, ChvD family (TIGR03719; HMM-score: 459.7)
    and 88 more
    thiol reductant ABC exporter, CydD subunit (TIGR02857; HMM-score: 161.9)
    Cellular processes Cellular processes Toxin production and resistance putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 150.9)
    Metabolism Transport and binding proteins Unknown substrate putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 150.9)
    Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04521; EC 3.6.3.-; HMM-score: 143.3)
    Cellular processes Cellular processes Pathogenesis type I secretion system ATPase (TIGR03375; HMM-score: 142.6)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR03375; HMM-score: 142.6)
    thiol reductant ABC exporter, CydC subunit (TIGR02868; HMM-score: 139.1)
    Cellular processes Cellular processes Cell division cell division ATP-binding protein FtsE (TIGR02673; HMM-score: 132.2)
    proposed F420-0 ABC transporter, ATP-binding protein (TIGR03873; HMM-score: 130.3)
    Metabolism Transport and binding proteins Cations and iron carrying compounds cobalt ABC transporter, ATP-binding protein (TIGR01166; HMM-score: 127.8)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 127.3)
    Metabolism Transport and binding proteins Other heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 127.3)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system (TIGR03864; HMM-score: 126.4)
    lantibiotic protection ABC transporter, ATP-binding subunit (TIGR03740; HMM-score: 123.8)
    Metabolism Transport and binding proteins Other daunorubicin resistance ABC transporter, ATP-binding protein (TIGR01188; HMM-score: 123.6)
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, ATP-binding protein (TIGR02142; EC 3.6.3.29; HMM-score: 123.1)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking lipoprotein releasing system, ATP-binding protein (TIGR02211; EC 3.6.3.-; HMM-score: 121.4)
    Metabolism Transport and binding proteins Other thiamine ABC transporter, ATP-binding protein (TIGR01277; EC 3.6.3.-; HMM-score: 120.1)
    Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04520; EC 3.6.3.-; HMM-score: 119.5)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 117.9)
    Metabolism Transport and binding proteins Other LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 117.9)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, ATP-binding protein (TIGR02315; EC 3.6.3.28; HMM-score: 116.5)
    Metabolism Energy metabolism Methanogenesis methyl coenzyme M reductase system, component A2 (TIGR03269; HMM-score: 116.4)
    gliding motility-associated ABC transporter ATP-binding subunit GldA (TIGR03522; HMM-score: 114.3)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtD (TIGR03411; HMM-score: 111.2)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking ABC-type bacteriocin transporter (TIGR01193; HMM-score: 109.8)
    Genetic information processing Protein fate Protein modification and repair ABC-type bacteriocin transporter (TIGR01193; HMM-score: 109.8)
    Metabolism Transport and binding proteins Other ABC-type bacteriocin transporter (TIGR01193; HMM-score: 109.8)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, ATP-binding protein (TIGR00968; EC 3.6.3.25; HMM-score: 108.6)
    ABC exporter ATP-binding subunit, DevA family (TIGR02982; HMM-score: 108)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtE (TIGR03410; HMM-score: 104.1)
    Metabolism Transport and binding proteins Other antigen peptide transporter 2 (TIGR00958; HMM-score: 103.4)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01842; HMM-score: 102.5)
    Cellular processes Cellular processes Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 102.2)
    Metabolism Transport and binding proteins Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 102.2)
    Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TIGR03265; HMM-score: 101.7)
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikE (TIGR02769; EC 3.6.3.24; HMM-score: 99.9)
    Metabolism Transport and binding proteins Unknown substrate anchored repeat-type ABC transporter, ATP-binding subunit (TIGR03771; HMM-score: 99.8)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 99.4)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 99.4)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other FeS assembly ATPase SufC (TIGR01978; HMM-score: 97.5)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 95.7)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 95.7)
    2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT (TIGR03258; HMM-score: 95.4)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, ATP-binding protein (TIGR00972; EC 3.6.3.27; HMM-score: 94.9)
    ABC transporter, permease/ATP-binding protein (TIGR02204; HMM-score: 94.6)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01846; HMM-score: 90.9)
    ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA (TIGR03005; HMM-score: 89.4)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 81.1)
    Metabolism Transport and binding proteins Other lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 81.1)
    Metabolism Transport and binding proteins Anions nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 80.5)
    Metabolism Transport and binding proteins Other nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 80.5)
    Metabolism Transport and binding proteins Other pigment precursor permease (TIGR00955; HMM-score: 79)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids glucan exporter ATP-binding protein (TIGR01192; EC 3.6.3.42; HMM-score: 77.7)
    phosphonate C-P lyase system protein PhnL (TIGR02324; HMM-score: 77)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids D-xylose ABC transporter, ATP-binding protein (TIGR02633; EC 3.6.3.17; HMM-score: 76.6)
    Metabolism Transport and binding proteins Amino acids, peptides and amines glycine betaine/L-proline transport ATP binding subunit (TIGR01186; HMM-score: 76)
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikD (TIGR02770; HMM-score: 71.7)
    Metabolism Transport and binding proteins Amino acids, peptides and amines polyamine ABC transporter, ATP-binding protein (TIGR01187; EC 3.6.3.31; HMM-score: 71.6)
    Metabolism Central intermediary metabolism Phosphorus compounds phosphonate C-P lyase system protein PhnK (TIGR02323; HMM-score: 71.3)
    Metabolism Transport and binding proteins Anions cystic fibrosis transmembrane conductor regulator (CFTR) (TIGR01271; EC 3.6.3.49; HMM-score: 67.9)
    D-methionine ABC transporter, ATP-binding protein (TIGR02314; EC 3.6.3.-; HMM-score: 66.6)
    Metabolism Transport and binding proteins Amino acids, peptides and amines cyclic peptide transporter (TIGR01194; HMM-score: 55.6)
    Metabolism Transport and binding proteins Other cyclic peptide transporter (TIGR01194; HMM-score: 55.6)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids peroxysomal long chain fatty acyl transporter (TIGR00954; HMM-score: 49.9)
    Metabolism Transport and binding proteins Amino acids, peptides and amines choline ABC transporter, ATP-binding protein (TIGR03415; HMM-score: 49.9)
    Metabolism Transport and binding proteins Other multi drug resistance-associated protein (MRP) (TIGR00957; HMM-score: 44.6)
    Metabolism Transport and binding proteins Other pleiotropic drug resistance family protein (TIGR00956; HMM-score: 40)
    Metabolism Transport and binding proteins Other rim ABC transporter (TIGR01257; HMM-score: 40)
    Unknown function General small GTP-binding protein domain (TIGR00231; HMM-score: 32.9)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair excinuclease ABC subunit A (TIGR00630; EC 3.1.25.-; HMM-score: 19.5)
    Cellular processes Cellular processes Pathogenesis type III secretion apparatus H+-transporting two-sector ATPase (TIGR02546; EC 3.6.3.14; HMM-score: 18.5)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type III secretion apparatus H+-transporting two-sector ATPase (TIGR02546; EC 3.6.3.14; HMM-score: 18.5)
    flagellar protein export ATPase FliI (TIGR03498; EC 3.6.3.14; HMM-score: 18.4)
    Cellular processes Cellular processes Chemotaxis and motility flagellar protein export ATPase FliI (TIGR03496; EC 3.6.3.14; HMM-score: 17.2)
    Metabolism Transport and binding proteins Amino acids, peptides and amines LAO/AO transport system ATPase (TIGR00750; EC 2.7.-.-; HMM-score: 17.1)
    Signal transduction Regulatory functions Protein interactions LAO/AO transport system ATPase (TIGR00750; EC 2.7.-.-; HMM-score: 17.1)
    helicase/secretion neighborhood ATPase (TIGR03819; HMM-score: 15.9)
    Cellular processes Cellular processes Chemotaxis and motility flagellar protein export ATPase FliI (TIGR03497; EC 3.6.3.14; HMM-score: 14.8)
    Genetic information processing Protein synthesis Other Obg family GTPase CgtA (TIGR02729; HMM-score: 14.3)
    Genetic information processing Protein synthesis Translation factors ribosome small subunit-dependent GTPase A (TIGR00157; EC 3.6.-.-; HMM-score: 14)
    Genetic information processing Protein synthesis Other ribosome biogenesis GTP-binding protein YsxC (TIGR03598; HMM-score: 13.6)
    Genetic information processing Protein synthesis Other ribosome-associated GTPase EngA (TIGR03594; HMM-score: 13.2)
    Genetic information processing Protein synthesis Other ribosome biogenesis GTPase YqeH (TIGR03597; HMM-score: 12.9)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking signal recognition particle-docking protein FtsY (TIGR00064; HMM-score: 12.6)
    Genetic information processing Protein synthesis Other GTP-binding protein Era (TIGR00436; HMM-score: 12.4)
    Metabolism Energy metabolism ATP-proton motive force interconversion ATPase, FliI/YscN family (TIGR01026; EC 3.6.3.14; HMM-score: 12.4)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pantothenate and coenzyme A dephospho-CoA kinase (TIGR00152; EC 2.7.1.24; HMM-score: 9.3)
  • TheSEED  :
    • COG0488: ATPase components of ABC transporters with duplicated ATPase domains
    Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines Folate Biosynthesis  COG0488: ATPase components of ABC transporters with duplicated ATPase domains
  • PFAM:
    P-loop_NTPase (CL0023) ABC_tran; ABC transporter (PF00005; HMM-score: 156.2)
    and 39 more
    AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 65.9)
    no clan defined ABC_tran_CTD; ABC transporter C-terminal domain (PF16326; HMM-score: 60.4)
    P-loop_NTPase (CL0023) ABC_tran_Xtn; ABC transporter (PF12848; HMM-score: 42.2)
    AAA_15; AAA ATPase domain (PF13175; HMM-score: 29.4)
    AAA_23; AAA domain (PF13476; HMM-score: 29.1)
    AAA_18; AAA domain (PF13238; HMM-score: 29)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 28.2)
    RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 27.9)
    MMR_HSR1; 50S ribosome-binding GTPase (PF01926; HMM-score: 27.8)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 27.2)
    SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 22.2)
    AAA_30; AAA domain (PF13604; HMM-score: 19.9)
    AAA_33; AAA domain (PF13671; HMM-score: 19)
    MeaB; Methylmalonyl Co-A mutase-associated GTPase MeaB (PF03308; HMM-score: 18.6)
    AAA_24; AAA domain (PF13479; HMM-score: 18.3)
    AAA_28; AAA domain (PF13521; HMM-score: 18)
    AAA_22; AAA domain (PF13401; HMM-score: 17.6)
    Roc; Ras of Complex, Roc, domain of DAPkinase (PF08477; HMM-score: 17.5)
    AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 17.4)
    NADP_Rossmann (CL0063) Methyltransf_28; Putative S-adenosyl-L-methionine-dependent methyltransferase (PF02636; HMM-score: 17.4)
    P-loop_NTPase (CL0023) NACHT; NACHT domain (PF05729; HMM-score: 17)
    DUF5906; Family of unknown function (DUF5906) (PF19263; HMM-score: 17)
    AAA_25; AAA domain (PF13481; HMM-score: 16.1)
    SRP54; SRP54-type protein, GTPase domain (PF00448; HMM-score: 14.9)
    no clan defined MPM1; Mitochondrial peculiar membrane protein 1 (PF17234; HMM-score: 14.7)
    P-loop_NTPase (CL0023) AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 14.6)
    FeoB_N; Ferrous iron transport protein B (PF02421; HMM-score: 14.1)
    RNA_helicase; RNA helicase (PF00910; HMM-score: 13.3)
    TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 13.3)
    DO-GTPase2; Double-GTPase 2 (PF19993; HMM-score: 12.9)
    RuvB_N; Holliday junction DNA helicase RuvB P-loop domain (PF05496; HMM-score: 12.6)
    Dynamin_N; Dynamin family (PF00350; HMM-score: 11.9)
    no clan defined CCDC22; Coiled-coil domain-containing protein 22 (PF05667; HMM-score: 11.9)
    P-loop_NTPase (CL0023) NTPase_1; NTPase (PF03266; HMM-score: 11.8)
    cobW; CobW/HypB/UreG, nucleotide-binding domain (PF02492; HMM-score: 11.6)
    MobB; Molybdopterin guanine dinucleotide synthesis protein B (PF03205; HMM-score: 11.6)
    AAA_7; P-loop containing dynein motor region (PF12775; HMM-score: 11.6)
    NB-ARC; NB-ARC domain (PF00931; HMM-score: 9.1)
    no clan defined DUF1664; Protein of unknown function (DUF1664) (PF07889; HMM-score: 9.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9592
    • Cytoplasmic Membrane Score: 0.0266
    • Cell wall & surface Score: 0.0038
    • Extracellular Score: 0.0104
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005509
    • TAT(Tat/SPI): 0.001412
    • LIPO(Sec/SPII): 0.000365
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSDFIVEKLSKSVGDKTVFRDISFIIHDLDRIGLIGVNGTGKTTLLDVLSGVSGFDGDVSPFSAKNDYQIGYLTQDPDFDDRKTVLDTVLSSELKEIQLIREYELIMLDYSEDKQARLERVMAEMDSLQAWEIESQVKTVLSKLGIQDLSTPVGELSGGLRRRVQLAQVLLGNHDLLLLDEPTNHLDIAIIEWLTLFLKNSKKTVLFITHDRYFLDALSTRIFELDRAGLTEYQGNYQDYVRLKAEQDERDAALLHKKEQLYKQELAWMRRQPQARATKQQARINRFHDLKKEVSGSSAETDLTMNFETSRIGKKVIEFQDVSFAYENKPILQNFNLLVQAKDRIGIVGDNGVGKSTLLNLIAGSLEPTAGQVVIGETVRIAYFSQQIEGLDESKRVINYLQEVAEEVKTSGGSTTSIAELLEQFLFPRSTHGTLIEKLSGGEKKRLYLLKLLLEKPNVLLLDEPTNDLDIATLTVLENFLQGFAGPVLTVSHDRYFLDKVATKILAFEDGKIRPFFGHYTDYLDEKAFETDMANQVQKAEKEKVVKVREDKKRMTYQEKQEWASIEGDIETLEKRIAAIEEEMQANGSDFGKLATLQKELDEKNEALLEKYERYEYLSEFDS

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ 1.0 1.1 Indu Warrier, Nikhil Ram-Mohan, Zeyu Zhu, Ariana Hazery, Haley Echlin, Jason Rosch, Michelle M Meyer, Tim van Opijnen
    The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence.
    PLoS Pathog: 2018, 14(12);e1007461
    [PubMed:30517198] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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