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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae TIGR4
  • locus tag: SP_1596 [new locus tag: SP_RS07865 ]
  • pan locus tag?: PNEUPAN001799000
  • symbol: SP_1596
  • pan gene symbol?: —
  • synonym:
  • product: IS3-Spn1, hypothetical protein, interruption

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP_1596 [new locus tag: SP_RS07865 ]
  • symbol: SP_1596
  • product: IS3-Spn1, hypothetical protein, interruption
  • replicon: chromosome
  • strand: -
  • coordinates: 1500752..1501006
  • length: 255
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AE005672 (1500752..1501006) NCBI
  • BioCyc:
  • MicrobesOnline: 117039 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGAAACTAACTTATGATGATAAAGTTCAGATCTATGAACTTAGAAAACAAGGATATAGC
    TTAGAGAAGCTTTCAAATAAATTTGGGATAAACAATTCTAATATTAGGTACATGATTAAA
    TTGATTGATCGTTACGGAATAGAGTTCGTCAAAAAAGGAAAAAATCGTTACTATTCTCCT
    GATTTAAAACAAGAAATGATTAATCCCAAATCATTCATACCTCTCTCAACTAGATGTAAC
    TTACAAAACCCCTGA
    60
    120
    180
    240
    255

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP_1596 [new locus tag: SP_RS07865 ]
  • symbol: SP_1596
  • description: IS3-Spn1, hypothetical protein, interruption
  • length: 84
  • theoretical pI: 10.1889
  • theoretical MW: 10041.6
  • GRAVY: -0.80119

⊟Function[edit | edit source]

  • TIGRFAM:
    Signal transduction Regulatory functions DNA interactions DNA-binding protein, Tfx family (TIGR00721; HMM-score: 13)
  • TheSEED  :
    • IS861, transposase (orf1), IS3 family, truncated
  • PFAM:
    HTH (CL0123) HTH_38; Helix-turn-helix domain (PF13936; HMM-score: 20.2)
    MerR_1; MerR HTH family regulatory protein (PF13411; HMM-score: 17.9)
    and 6 more
    HTH_35; Winged helix-turn-helix DNA-binding (PF13693; HMM-score: 15.7)
    HTH_11; HTH domain (PF08279; HMM-score: 13.3)
    HTH_28; Helix-turn-helix domain (PF13518; HMM-score: 13.1)
    HTH_psq; helix-turn-helix, Psq domain (PF05225; HMM-score: 12.7)
    no clan defined Mu-transpos_C; Mu transposase, C-terminal (PF09299; HMM-score: 12.1)
    HTH (CL0123) FeoC; FeoC like transcriptional regulator (PF09012; HMM-score: 12)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0.24
    • Cytoplasmic Membrane Score: 0.05
    • Cellwall Score: 0.8
    • Extracellular Score: 8.91
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.6146
    • Cytoplasmic Membrane Score: 0.0031
    • Cell wall & surface Score: 0.0051
    • Extracellular Score: 0.3772
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011771
    • TAT(Tat/SPI): 0.000361
    • LIPO(Sec/SPII): 0.000823
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKLTYDDKVQIYELRKQGYSLEKLSNKFGINNSNIRYMIKLIDRYGIEFVKKGKNRYYSPDLKQEMINPKSFIPLSTRCNLQNP

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Indu Warrier, Nikhil Ram-Mohan, Zeyu Zhu, Ariana Hazery, Haley Echlin, Jason Rosch, Michelle M Meyer, Tim van Opijnen
    The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence.
    PLoS Pathog: 2018, 14(12);e1007461
    [PubMed:30517198] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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