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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TIGR4
- locus tag: SP_1707 [new locus tag: SP_RS08440 ]
- pan locus tag?: PNEUPAN003128000
- symbol: SP_1707
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP_1707 [new locus tag: SP_RS08440 ]
- symbol: SP_1707
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1611852..1612190
- length: 339
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE005672 (1611852..1612190) NCBI
- BioCyc:
- MicrobesOnline: 117144 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_2381 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301GTGATGGAACACTTGTTTAAAATGATAATCTTATTACCCTGTTTTTACTTTTTCAGCTGG
ATTGACAAGGATAATAGAGAAAGTAAATTTTTCCCAATTTTTTACTATTTTTACTGGATT
TACATCACCCTCTATGCTCTTTTTAGCCTTGCTTGGACAGTTTTTTCAGTTCTGTTTTTC
AATATCGTCTTGAGAAATTTGACAGATATCAAGTTATGGGGTATTTGGCTATTATTACTA
CTTATCGCTTTTGCTAGTGACTGGTTAGCCTATGTCTTTTTCAAAAAAATGCTTGACTTG
AGACGGGAACTAGGGAAGTCTAAAGGCGGAAGGCATTGA60
120
180
240
300
339
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP_1707 [new locus tag: SP_RS08440 ]
- symbol: SP_1707
- description: hypothetical protein
- length: 112
- theoretical pI: 9.80628
- theoretical MW: 13780.5
- GRAVY: 0.627679
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- FIG01114173: hypothetical protein
- PFAM: no clan defined DUF6796; Family of unknown function (DUF6796) (PF20599; HMM-score: 15.4)GPCR_A (CL0192) 7TM_GPCR_Srz; Serpentine type 7TM GPCR chemoreceptor Srz (PF10325; HMM-score: 14)and 4 moreno clan defined DUF805; Protein of unknown function (DUF805) (PF05656; HMM-score: 9.8)BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 9.5)Peptidase_MA (CL0126) DUF3810; Protein of unknown function (DUF3810) (PF12725; HMM-score: 8.1)no clan defined DHHC; DHHC palmitoyltransferase (PF01529; HMM-score: 6.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 2
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.996
- Cell wall & surface Score: 0
- Extracellular Score: 0.0039
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001992
- TAT(Tat/SPI): 0.000132
- LIPO(Sec/SPII): 0.060613
- predicted transmembrane helices (TMHMM): 3
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MMEHLFKMIILLPCFYFFSWIDKDNRESKFFPIFYYFYWIYITLYALFSLAWTVFSVLFFNIVLRNLTDIKLWGIWLLLLLIAFASDWLAYVFFKKMLDLRRELGKSKGGRH
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2381 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ 1.0 1.1 Indu Warrier, Nikhil Ram-Mohan, Zeyu Zhu, Ariana Hazery, Haley Echlin, Jason Rosch, Michelle M Meyer, Tim van Opijnen
The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence.
PLoS Pathog: 2018, 14(12);e1007461
[PubMed:30517198] [WorldCat.org] [DOI] (I e)