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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TIGR4
- locus tag: SP_2212 [new locus tag: SP_RS11295 ]
- pan locus tag?: PNEUPAN003918000
- symbol: SP_2212
- pan gene symbol?: transposase_12
- synonym:
- product: transposase family protein, truncation
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP_2212 [new locus tag: SP_RS11295 ]
- symbol: SP_2212
- product: transposase family protein, truncation
- replicon: chromosome
- strand: +
- coordinates: 2132190..2132435
- length: 246
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE005672 (2132190..2132435) NCBI
- BioCyc:
- MicrobesOnline: 10348745 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_2039 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241ATGGACAATGCTATATGGCATAAATCAAGTACCTTAAAGATTCCGACTAATATTGGCTTT
GCATTTATTCCTCCATACACACCAGAGATGAACCCCATTGAACAAGTGTGGAAAGAGATT
CGTAAACGTGGATTTAAGAATAAAGCCTTTCGAACTTTGGAAGATGTCATACAAGGACTG
GAGAAGGAGGTGATAAAGTCCATCGTTAATCGGAGACGGACTAGAATGCTTTTTGAAAAC
AGATGA60
120
180
240
246
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP_2212 [new locus tag: SP_RS11295 ]
- symbol: SP_2212
- description: transposase family protein, truncation
- length: 81
- theoretical pI: 10.9933
- theoretical MW: 9674.25
- GRAVY: -0.623457
⊟Function[edit | edit source]
- TIGRFAM: B12-binding domain/radical SAM domain protein, Ta0216 family (TIGR04190; HMM-score: 11.1)
- TheSEED :
- Mobile element protein
- PFAM: RNase_H (CL0219) DDE_3; DDE superfamily endonuclease (PF13358; HMM-score: 39.1)and 3 moreno clan defined Antimicrobial19; Pseudin antimicrobial peptide (PF08225; HMM-score: 14.4)RNase_H (CL0219) DDE_Tnp_ISAZ013; Rhodopirellula transposase DDE domain (PF07592; HMM-score: 13.3)rve_3; Integrase core domain (PF13683; HMM-score: 12.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.5494
- Cytoplasmic Membrane Score: 0.0175
- Cell wall & surface Score: 0.0016
- Extracellular Score: 0.4314
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.022441
- TAT(Tat/SPI): 0.000235
- LIPO(Sec/SPII): 0.001017
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MDNAIWHKSSTLKIPTNIGFAFIPPYTPEMNPIEQVWKEIRKRGFKNKAFRTLEDVIQGLEKEVIKSIVNRRRTRMLFENR
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2039 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]