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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 11-DEC-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae A026
  • locus tag: T308_RS02040 [old locus tag: T308_02040 ]
  • pan locus tag?: PNEUPAN001264000
  • symbol: fabD
  • pan gene symbol?: fabD
  • synonym:
  • product: ACP S-malonyltransferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: T308_RS02040 [old locus tag: T308_02040 ]
  • symbol: fabD
  • product: ACP S-malonyltransferase
  • replicon: chromosome
  • strand: +
  • coordinates: 383411..384331
  • length: 921
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_022655 (383411..384331) NCBI
  • BioCyc: T308_RS02040 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0383 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGACTAAAACAGCCTTTTTATTTGCTGGTCAAGGTGCCCAGTATCTAGGGATGGGACGG
    GATTTCTATGATCAGTATCCGATTGTTAAAGAAACGATTGATCGAGCGAGTCAGGTGCTC
    GGTTATGATTTGCGTTATCTCATCGATACGGAAGAGGACAAACTCAATCAGACCCGCTAT
    ACGCAACCAGCCATTCTAGCGACTTCGGTTGCTATCTACCGTTTATTGCAAGAAAAGGGC
    TATCAGCCTGATATGGTTGCTGGTTTGTCTCTTGGAGAATACTCTGCCTTGGTGGCAAGC
    GGCGCCTTGGATTTTGAAGATGCGGTTGCCTTGGTAGCTAAGCGTGGAGCCTATATGGAA
    GAAGCGACTCCTGCTGACTCTGGCAAGATGGTAGCAGTTCTCAATACGCCAGTAGAGGTC
    ATTGAAGAAGCCTGTCAAAAAGCTTCTGAACTTGGAGTGGTTACTCCAGCCAACTATAAC
    ACACCTGCACAAATCGTCATTGCTGGAGAAGTGGTTGCAGTTGATCGAGCGGTTGAACTT
    TTGCAAGAAGCAGGTGCCAAACGCTTGATTCCTCTTAAGGTGTCAGGTCCCTTTCACACC
    GCTCTCCTTGAGCCAGCTAGCCAGAAACTAGCTGAAACTCTAGCTCAGGTAAGTTTTTCA
    GATTTTACTTGTCCCCTAGTCGGCAATACAGAAGCTGCTGTGATGCAAAAAGAGGACATT
    GCTCAGCTCTTGACGCGTCAGGTCAAGGAACCCGTTCGTTTCTATGAAAGTATTGGGGTC
    ATGCAAGAAGCAGGCATAAGCAACTTTATCGAGATTGGACCGGGGAAAGTCTTGTCAGGT
    TTTGTTAAAAAAATTGATCAAACTGCTCACTTAGCTCATGTGGAAGATCAAGCGAGTTTA
    GTAGCACTTTTAGAAAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    921

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: T308_RS02040 [old locus tag: T308_02040 ]
  • symbol: FabD
  • description: ACP S-malonyltransferase
  • length: 306
  • theoretical pI: 4.45615
  • theoretical MW: 33120.7
  • GRAVY: 0.0464052

⊟Function[edit | edit source]

  • reaction:
    EC 2.3.1.39?  ExPASy
    [Acyl-carrier-protein] S-malonyltransferase Malonyl-CoA + an [acyl-carrier-protein] = CoA + a malonyl-[acyl-carrier-protein]
  • TIGRFAM:
    Metabolism Fatty acid and phospholipid metabolism Biosynthesis malonyl CoA-acyl carrier protein transacylase (TIGR00128; EC 2.3.1.39; HMM-score: 344.6)
    and 2 more
    malonate decarboxylase, epsilon subunit (TIGR03131; HMM-score: 229.5)
    polyketide-type polyunsaturated fatty acid synthase PfaA (TIGR02813; HMM-score: 167.5)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    Patatin (CL0323) Acyl_transf_1; Acyl transferase domain (PF00698; HMM-score: 130.7)
    and 1 more
    OB (CL0021) Ribosomal_S28e; Ribosomal protein S28e (PF01200; HMM-score: 13.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9982
    • Cytoplasmic Membrane Score: 0.0001
    • Cell wall & surface Score: 0.0009
    • Extracellular Score: 0.0008
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011855
    • TAT(Tat/SPI): 0.000625
    • LIPO(Sec/SPII): 0.005495
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000167628 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTKTAFLFAGQGAQYLGMGRDFYDQYPIVKETIDRASQVLGYDLRYLIDTEEDKLNQTRYTQPAILATSVAIYRLLQEKGYQPDMVAGLSLGEYSALVASGALDFEDAVALVAKRGAYMEEATPADSGKMVAVLNTPVEVIEEACQKASELGVVTPANYNTPAQIVIAGEVVAVDRAVELLQEAGAKRLIPLKVSGPFHTALLEPASQKLAETLAQVSFSDFTCPLVGNTEAAVMQKEDIAQLLTRQVKEPVRFYESIGVMQEAGISNFIEIGPGKVLSGFVKKIDQTAHLAHVEDQASLVALLEK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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