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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 09-NOV-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Taiwan19F-14
  • locus tag: SPT_RS07890 [old locus tag: SPT_1589 ]
  • pan locus tag?: PNEUPAN003046000
  • symbol: SPT_RS07890
  • pan gene symbol?: psaC
  • synonym:
  • product: metal ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPT_RS07890 [old locus tag: SPT_1589 ]
  • symbol: SPT_RS07890
  • product: metal ABC transporter permease
  • replicon: chromosome
  • strand: +
  • coordinates: 1508952..1509800
  • length: 849
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_012469 (1508952..1509800) NCBI
  • BioCyc: SPT_RS07890 BioCyc
  • MicrobesOnline: see SPT_1589
  • PneumoBrowse for strain D39V: SPV_1462 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGATTGCAGAATTTATCGATGGATTGCAAAAATTCCATTTCCTACAAAATGCCTTGATA
    ACAGCTATTGTCGTCGGGATTGTAGCTGGAGCCGTGGGATGTTTCATTATTCTACGCGGG
    ATGTCACTCATGGGAGATGCCATTTCACATGCTGTCTTACCAGGTGTAGCCCTCTCCTTC
    ATCTTGGGCCTTGACTTCTTTATCGGAGCCATTGTCTTTGGATTGCTAGCTGCCATCATC
    ATTACCTACATCAAAGGAAACTCGATTATCAAAAGCGATACCGCCATCGGCATTACCTTT
    TCTTCTTTCTTAGCCCTCGGTATCATCTTGATTGGTGTCGCTAAAAGTTCAACTGACCTT
    TTCCATATCCTTTTTGGTAATATCCTGGCCGTCCAAGATACGGATATGTTTATTACTATG
    GGTGTGGGGGCAGCCATCCTCTTGTTAATCTGGATTTTCTTCAAGCAACTCTTGATAACT
    TCCTTTGATGAACTCTTGGCTAAAGCCATGGGAATGCCTGTCAATTTCTATCACTACCTT
    CTCATGGTACTCCTGACTCTCGTGTCTGTGACAGCCATGCAAAGTGTCGGAACTATCCTG
    ATTGTAGCCATGCTGATTACCCCAGCTGCAACTGCTTATCTGTATGCTAATAGTCTGAAA
    AGCATGATTTTCCTTTCCTCAACCTTCGGAGCTACTGCTTCAGTTTTGGGACTCTTTATT
    GGCTATAGTTTTAATGTTGCGGCAGGTTCTAGTATCGTGCTTACAGCTGCTAGTTTCTTT
    CTCATTAGCTTCTTTATCGCTCCCAAACAACGATATTTGAAACTGAAAAATAAACATTTG
    TTAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    849

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPT_RS07890 [old locus tag: SPT_1589 ]
  • symbol: SPT_RS07890
  • description: metal ABC transporter permease
  • length: 282
  • theoretical pI: 9.55148
  • theoretical MW: 30186.2
  • GRAVY: 1.24184

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Unknown substrate anchored repeat-type ABC transporter, permease subunit (TIGR03770; HMM-score: 197.1)
  • TheSEED: see SPT_1589
  • ⊞PFAM:
    Membrane_trans (CL0142) ABC-3; ABC 3 transport family (PF00950; HMM-score: 257.4)
    and 1 more
    FecCD; FecCD transport family (PF01032; HMM-score: 32.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004809
    • TAT(Tat/SPI): 0.001772
    • LIPO(Sec/SPII): 0.214911
  • predicted transmembrane helices (TMHMM): 8

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000559784 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MIAEFIDGLQKFHFLQNALITAIVVGIVAGAVGCFIILRGMSLMGDAISHAVLPGVALSFILGLDFFIGAIVFGLLAAIIITYIKGNSIIKSDTAIGITFSSFLALGIILIGVAKSSTDLFHILFGNILAVQDTDMFITMGVGAAILLLIWIFFKQLLITSFDELLAKAMGMPVNFYHYLLMVLLTLVSVTAMQSVGTILIVAMLITPAATAYLYANSLKSMIFLSSTFGATASVLGLFIGYSFNVAAGSSIVLTAASFFLISFFIAPKQRYLKLKNKHLLK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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