From PneumoWiki
Revision as of 13:13, 20 January 2022 by Robot (talk | contribs) (Created page with "<protect> <pneumodatabase>annotation</pneumodatabase> =Summary= *<pneumodatabase>organism</pneumodatabase> *<pneumodatabase>locus</pneumodatabase> *<pneumodatabase>pan locus...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae TIGR4
  • locus tag: SP_1799 [new locus tag: SP_RS08930 ]
  • pan locus tag?: PNEUPAN003280000
  • symbol: SP_1799
  • pan gene symbol?: rbsR
  • synonym:
  • product: sugar-binding transcriptional regulator, LacI family

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP_1799 [new locus tag: SP_RS08930 ]
  • symbol: SP_1799
  • product: sugar-binding transcriptional regulator, LacI family
  • replicon: chromosome
  • strand: -
  • coordinates: 1715315..1716316
  • length: 1002
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGGTAGAACAAAGAAAATCAATTACCATGAAAGATGTTGCTTTAGAAGCAGGAGTTAGT
    GTTGGAACTGTTTCACGTGTAATTAATAAAGAAAAAGGCATTAAAGAAGTAACTTTGAAA
    AAAGTGGAACAAGCGATTAAAACTTTGAATTACATTCCAGATTACTACGCTAGAGGAATG
    AAAAAAAATCGAACAGAAACGATTGCAATCATTGTACCAAGTATCTGGCATCCCTTCTTT
    TCAGAATTTGCTATGCATGTGGAAAATGAAGTCTATAAGAGAAATAACAAATTACTCTTA
    TGTTCTATCAATGGTACAAATAGAGAGCAAGACTATCTGGAGATGTTGCGTCATAATAAA
    GTTGATGGAGTGGTTGCCATTACCTATAGTCCAATTGAACATTACTTGACGTCAGGAATT
    CCCTTTGTTAGTATTGACCGCACATACTCAGATATTGCCATTCCTTGTGTTTCATCAGAT
    AATGATGCAGGTGGAAGAGAAGCAGCTAAACAATTAATTAGTAAAGGATGTCAGCATTTA
    GCCTTTGTGGGCGGACATAATACAACCATTAATGAAACCAAACGTCGTAGAATTTCATTT
    GAAAAGTATGTCCAAGAGCATAAAATACCTCTTAGTATTTTTGATTTGGATGAGACAGTT
    ACTGACTATTATGGAAAGCTAGAGAGTTTCTTGGAAGAAAATTCTTCTATAGATGGAATT
    TTTACAATCAACGATTTTACAGCTTTGGATGTGATTGAAATACTAGAAAAAAATGGCAAA
    CGTATTCCTCATGATGTCCAAATTATTGGATACGATGGAATTAAAATGGCTGGAGATAGA
    GATTATCTACTTTCAACTATTGAACAACCATTGGAAGAAATGGCAAAAGAAGCGGTTCGT
    ATTTTGTTTGATATAATTGATGGAAAGACTGTTAATTTGCAGACAATCCTACCAGTAAAA
    TTTGTTGAAGGAAAAACAACAAAAAATGAAAATAAGTCTTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1002

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP_1799 [new locus tag: SP_RS08930 ]
  • symbol: SP_1799
  • description: sugar-binding transcriptional regulator, LacI family
  • length: 333
  • theoretical pI: 6.32682
  • theoretical MW: 37728.9
  • GRAVY: -0.315015

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Signal transduction Regulatory functions DNA interactions catabolite control protein A (TIGR01481; HMM-score: 152.9)
    and 5 more
    Signal transduction Regulatory functions DNA interactions D-fructose-responsive transcription factor (TIGR02417; HMM-score: 105.7)
    Signal transduction Regulatory functions DNA interactions trehalose operon repressor (TIGR02405; HMM-score: 69.8)
    Signal transduction Regulatory functions DNA interactions transcriptional regulator, y4mF family (TIGR03070; HMM-score: 15.4)
    Genetic information processing Transcription Transcription factors RNA polymerase sigma-54 factor (TIGR02395; HMM-score: 14.1)
    Signal transduction Regulatory functions DNA interactions transcriptional repressor BetI (TIGR03384; HMM-score: 12.2)
  • TheSEED  :
    • Sugar-binding transcriptional regulator, LacI family protein
  • ⊞PFAM:
    Periplas_BP (CL0144) Peripla_BP_3; Periplasmic binding protein-like domain (PF13377; HMM-score: 85)
    Peripla_BP_1; Periplasmic binding proteins and sugar binding domain of LacI family (PF00532; HMM-score: 73.4)
    and 10 more
    HTH (CL0123) LacI; Bacterial regulatory proteins, lacI family (PF00356; HMM-score: 65.5)
    Periplas_BP (CL0144) Peripla_BP_4; Periplasmic binding protein domain (PF13407; HMM-score: 60)
    HTH (CL0123) HTH_3; Helix-turn-helix (PF01381; HMM-score: 22.6)
    HTH_Tnp_ISL3; Helix-turn-helix domain of transposase family ISL3 (PF13542; HMM-score: 16.8)
    HTH_24; Winged helix-turn-helix DNA-binding (PF13412; HMM-score: 15.6)
    TetR_N; Bacterial regulatory proteins, tetR family (PF00440; HMM-score: 13.3)
    no clan defined TnsD; Tn7-like transposition protein D (PF15978; HMM-score: 13.1)
    DUF5779; Family of unknown function (DUF5779) (PF19091; HMM-score: 12.3)
    HTH (CL0123) HTH_AraC; Bacterial regulatory helix-turn-helix proteins, AraC family (PF00165; HMM-score: 12.1)
    Sigma70_r4; Sigma-70, region 4 (PF04545; HMM-score: 11.4)

⊟Structure, modifications & cofactors[edit | edit source]

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008633
    • TAT(Tat/SPI): 0.001993
    • LIPO(Sec/SPII): 0.003789
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MVEQRKSITMKDVALEAGVSVGTVSRVINKEKGIKEVTLKKVEQAIKTLNYIPDYYARGMKKNRTETIAIIVPSIWHPFFSEFAMHVENEVYKRNNKLLLCSINGTNREQDYLEMLRHNKVDGVVAITYSPIEHYLTSGIPFVSIDRTYSDIAIPCVSSDNDAGGREAAKQLISKGCQHLAFVGGHNTTINETKRRRISFEKYVQEHKIPLSIFDLDETVTDYYGKLESFLEENSSIDGIFTINDFTALDVIEILEKNGKRIPHDVQIIGYDGIKMAGDRDYLLSTIEQPLEEMAKEAVRILFDIIDGKTVNLQTILPVKFVEGKTTKNENKS

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Ramkumar Iyer, Andrew Camilli
Sucrose metabolism contributes to in vivo fitness of Streptococcus pneumoniae.
Mol Microbiol: 2007, 66(1);1-13
[PubMed:17880421] [WorldCat.org] [DOI] (P p)

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SP_1799&oldid=4022"