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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 02-FEB-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae D39V
  • locus tag: SPV_RS07605 [old locus tag: SPV_1432 ]
  • pan locus tag?: PNEUPAN002991000
  • symbol: galE
  • pan gene symbol?: galE-1
  • synonym:
  • product: UDP-glucose 4-epimerase GalE

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPV_RS07605 [old locus tag: SPV_1432 ]
  • symbol: galE
  • product: UDP-glucose 4-epimerase GalE
  • replicon: chromosome
  • strand: -
  • coordinates: 1448715..1449734
  • length: 1020
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGCAAGAAAAGATTTTGGTAACTGGTGGTGCCGGTTTTATTGGAACCCACACTGTTATT
    GAATTGATCCAAGCAGGTCATCAAGTTGTTGTGGTGGATAATCTTGTCAATAGCAATCGT
    AAGAGTTTAGAAGTTGTTGAAAGAATCACAGGAGTTGAGATTCCTTTCTATGAGGCAGAT
    ATTCGTGACACAGATACCCTCAGAGATATTTTCAAGCAGGAAGAACCGACTGGTGTCATT
    CACTTTGCTGGTTTGAAGGCTGTTGGCGAATCAACACGTATCCCTCTTGCCTACTATGAC
    AACAATATCGCTGGAACTGTCAGCCTTTTGAAAGCCATGGAAGAAAACAACTGTAAAAAC
    ATCATCTTCAGTTCTTCTGCGACAGTTTACGGGGATCCGCACACAGTGCCCATCTTGGAA
    GATTTCCCACTTTCAGTGACCAACCCATACGGTCGTACTAAGCTCATGCTAGAGGAAATT
    TTGACTGATATTTACAAAGCAGACTCAGAATGGAATGTTGTCTTGCTTCGTTACTTTAAC
    CCAATCGGAGCCCATGAGAGTGGTGATTTGGGAGAAAATCCAAACGGTATTCCAAACAAT
    CTCTTGCCATATGTGACTCAAGTAGCCGTTGGAAAATTAGAGCAAGTGCAAGTGTTTGGA
    GACGATTACGATACGGAAGATGGAACAGGTGTTCGTGACTATATCCACGTTGTCGATTTG
    GCTAAGGGTCACGTTGCAGCTTTGAAAAAAATCCAAAAAGGTTCAGGACTAAACGTTTAT
    AACCTTGGAACTGGTAAAGGTTACTCAGTTCTTGAAATTATCCAAAACATGGAAAAAGCG
    GTGGGATGTCCTATTCCTTACCGCATCGTAGAACGTCGCCCAGGTGATATCGCTGCCTGC
    TACTCAGACCCAGCAAAGGCTAAAGCAGAACTCGGTTGGGAAGCAGAACTCGACATCACC
    CAAATGTGTGAAGACGCATGGCGTTGGCAGAGCAAGCATCCAAATGGATTTGAAGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPV_RS07605 [old locus tag: SPV_1432 ]
  • symbol: GalE
  • description: UDP-glucose 4-epimerase GalE
  • length: 339
  • theoretical pI: 4.55533
  • theoretical MW: 37425
  • GRAVY: -0.219174

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 5.1.3.2?  ExPASy
    UDP-glucose 4-epimerase UDP-alpha-D-glucose = UDP-alpha-D-galactose
  • ⊞TIGRFAM:
    Metabolism Energy metabolism Sugars UDP-glucose 4-epimerase GalE (TIGR01179; EC 5.1.3.2; HMM-score: 468.6)
    and 22 more
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides dTDP-glucose 4,6-dehydratase (TIGR01181; EC 4.2.1.46; HMM-score: 120.8)
    NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family (TIGR04180; HMM-score: 110.1)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides ADP-glyceromanno-heptose 6-epimerase (TIGR02197; EC 5.1.3.20; HMM-score: 107.8)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides CDP-glucose 4,6-dehydratase (TIGR02622; EC 4.2.1.45; HMM-score: 70)
    hopanoid-associated sugar epimerase (TIGR03466; HMM-score: 66.8)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides GDP-mannose 4,6-dehydratase (TIGR01472; EC 4.2.1.47; HMM-score: 36.2)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides dTDP-4-dehydrorhamnose reductase (TIGR01214; EC 1.1.1.133; HMM-score: 33.9)
    UDP-N-acetylglucosamine 4,6-dehydratase (inverting) (TIGR03589; EC 4.2.1.115; HMM-score: 33.1)
    Hypothetical proteins Conserved TIGR01777 family protein (TIGR01777; HMM-score: 27.9)
    thioester reductase domain (TIGR01746; HMM-score: 27.7)
    2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (TIGR04316; EC 1.3.1.28; HMM-score: 22.3)
    acetoacetyl-CoA reductase (TIGR01829; EC 1.1.1.36; HMM-score: 20.7)
    3-hydroxybutyrate dehydrogenase (TIGR01963; HMM-score: 18.7)
    Metabolism Fatty acid and phospholipid metabolism Biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase (TIGR01830; EC 1.1.1.100; HMM-score: 18.4)
    UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase (TIGR04130; EC 4.2.1.-,5.1.3.-; HMM-score: 18.4)
    Metabolism Energy metabolism Fermentation acetoin reductases (TIGR02415; EC 1.1.1.-; HMM-score: 18.1)
    Unknown function Enzymes of unknown specificity SDR family mycofactocin-dependent oxidoreductase (TIGR04504; EC 1.1.99.-; HMM-score: 17.8)
    rhamnulose-1-phosphate aldolase/alcohol dehydrogenase (TIGR02632; EC 1.1.1.1,4.1.2.19; HMM-score: 17.1)
    nucleotide sugar dehydrogenase (TIGR03026; HMM-score: 15.1)
    2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (TIGR03206; EC 1.1.1.-; HMM-score: 14.2)
    polyketide-type polyunsaturated fatty acid synthase PfaA (TIGR02813; HMM-score: 13.5)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides 2-deoxy-D-gluconate 3-dehydrogenase (TIGR01832; EC 1.1.1.125; HMM-score: 12.1)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • ⊞PFAM:
    NADP_Rossmann (CL0063) GDP_Man_Dehyd; GDP-mannose 4,6 dehydratase (PF16363; HMM-score: 210.9)
    Epimerase; NAD dependent epimerase/dehydratase family (PF01370; HMM-score: 193.9)
    and 13 more
    3Beta_HSD; 3-beta hydroxysteroid dehydrogenase/isomerase family (PF01073; HMM-score: 64.3)
    Polysacc_synt_2; Polysaccharide biosynthesis protein (PF02719; HMM-score: 53.4)
    RmlD_sub_bind; RmlD substrate binding domain (PF04321; HMM-score: 42.7)
    KR; KR domain (PF08659; HMM-score: 34.3)
    NAD_binding_10; NAD(P)H-binding (PF13460; HMM-score: 30.7)
    adh_short; short chain dehydrogenase (PF00106; HMM-score: 29.8)
    NAD_binding_4; Male sterility protein (PF07993; HMM-score: 22.1)
    NmrA; NmrA-like family (PF05368; HMM-score: 20.5)
    UDPG_MGDP_dh_N; UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain (PF03721; HMM-score: 16.8)
    adh_short_C2; Enoyl-(Acyl carrier protein) reductase (PF13561; HMM-score: 16.3)
    TrkA_N; TrkA-N domain (PF02254; HMM-score: 15.1)
    PELOTA (CL0101) SpoU_sub_bind; RNA 2'-O ribose methyltransferase substrate binding (PF08032; HMM-score: 12.7)
    GT-B (CL0113) Glyco_transf_4; Glycosyltransferase Family 4 (PF13439; HMM-score: 12.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.024002
    • TAT(Tat/SPI): 0.001156
    • LIPO(Sec/SPII): 0.001695
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001156535 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MQEKILVTGGAGFIGTHTVIELIQAGHQVVVVDNLVNSNRKSLEVVERITGVEIPFYEADIRDTDTLRDIFKQEEPTGVIHFAGLKAVGESTRIPLAYYDNNIAGTVSLLKAMEENNCKNIIFSSSATVYGDPHTVPILEDFPLSVTNPYGRTKLMLEEILTDIYKADSEWNVVLLRYFNPIGAHESGDLGENPNGIPNNLLPYVTQVAVGKLEQVQVFGDDYDTEDGTGVRDYIHVVDLAKGHVAALKKIQKGSGLNVYNLGTGKGYSVLEIIQNMEKAVGCPIPYRIVERRPGDIAACYSDPAKAKAELGWEAELDITQMCEDAWRWQSKHPNGFED

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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