From PneumoWiki
Revision as of 16:27, 20 January 2022 by Robot (talk | contribs) (Created page with "<protect> <pneumodatabase>annotation</pneumodatabase> =Summary= *<pneumodatabase>organism</pneumodatabase> *<pneumodatabase>locus</pneumodatabase> *<pneumodatabase>pan locus...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 03-APR-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Hu15
  • locus tag: SPNHU15_02159 [new locus tag: SPNHU15_RS10245 ]
  • pan locus tag?: PNEUPAN003677000
  • symbol: SPNHU15_02159
  • pan gene symbol?: tktN
  • synonym:
  • product: transketolase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNHU15_02159 [new locus tag: SPNHU15_RS10245 ]
  • symbol: SPNHU15_02159
  • product: transketolase
  • replicon: chromosome
  • strand: -
  • coordinates: 2028758..2029540
  • length: 783
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP020551 (2028758..2029540) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1958 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    TTGAATCATCTTGGATTCGGACATTACGGAGGAAGTTTGTCTATCGTAGAAGTTTTAGCA
    GTGCTTTATGGTGAAATAATGCCAATGACTCCAGAAATATTTGCAGCACGAGATAGAGAT
    TATTTCATATTATCAAAAGGTCATGGAGGACCAGCTCTATACAGTACACTCTATTTGAAT
    GGTTTCTTTGACAAAGAATTCTTATATTCTTTAAATACAAATGGAACCAAATTACCGTCT
    CATCCTGATAGAAATCTAACGCCAGGCATAGATATGACAACGGGCTCTTTAGGACAAGGA
    ATTAGTGTTGCAACTGGACTTGCATATGGTCAGAGAATAAGAAAGAGTCCCTTTTATACT
    TACGCTATTGTTGGAGATGGTGAGTTAAATGAGGGACAATGTTGGGAGGCTATACAGTTT
    GCTTCTCATCAACAGTTATCCAACTTAATTGTATTTGTTGATGATAACAAAAAACAATTA
    GATGGTTTTACAAAGGATATTTGTAATTCAGGTGATTTCGTAGAAAAATTTTCAGCATTT
    GGATTTGAATCCATTAGGGTCAAGGGTTCAGATATTAGAGAAATTTATGAAGGGATTGTC
    CAATTAAAACAGTCAAATAATTCATCACCTAAGTGCATTGTATTAGATACTATTAAAGGT
    CAAGGGGTTCAAGAGCTGGAAGAAATGAAATCCAATCATCATCTTCGCCCTACTGTAGAG
    GAGAAACAAATGTTAACTTCAGTTGTAGAAAGATTAAGTCAGGAATTGGAGGAAACAGAA
    TGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    783

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNHU15_02159 [new locus tag: SPNHU15_RS10245 ]
  • symbol: SPNHU15_02159
  • description: transketolase
  • length: 260
  • theoretical pI: 4.89196
  • theoretical MW: 28947.5
  • GRAVY: -0.302692

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Metabolism Energy metabolism Pentose phosphate pathway transketolase (TIGR00232; EC 2.2.1.1; HMM-score: 159.1)
    and 8 more
    Metabolism Energy metabolism Pyruvate dehydrogenase pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit (TIGR03182; EC 1.2.4.1; HMM-score: 54.3)
    pyruvate dehydrogenase (acetyl-transferring), homodimeric type (TIGR00759; EC 1.2.4.1; HMM-score: 46.7)
    Metabolism Energy metabolism Pyruvate dehydrogenase pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit (TIGR03181; EC 1.2.4.1; HMM-score: 41.6)
    alpha-ketoglutarate dehydrogenase (TIGR03186; HMM-score: 38.7)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other 1-deoxy-D-xylulose-5-phosphate synthase (TIGR00204; EC 2.2.1.7; HMM-score: 30.5)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Thiamine 1-deoxy-D-xylulose-5-phosphate synthase (TIGR00204; EC 2.2.1.7; HMM-score: 30.5)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pyridoxine 1-deoxy-D-xylulose-5-phosphate synthase (TIGR00204; EC 2.2.1.7; HMM-score: 30.5)
    sulfopyruvate decarboxylase, beta subunit (TIGR03846; EC 4.1.1.79; HMM-score: 12.2)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • ⊞PFAM:
    THDP-binding (CL0254) Transketolase_N; Transketolase, thiamine diphosphate binding domain (PF00456; HMM-score: 153.7)
    and 4 more
    DXP_synthase_N; 1-deoxy-D-xylulose-5-phosphate synthase (PF13292; HMM-score: 38.2)
    E1_dh; Dehydrogenase E1 component (PF00676; HMM-score: 33.9)
    XFP_N; XFP N-terminal domain (PF09364; HMM-score: 24.3)
    TPP_enzyme_C; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain (PF02775; HMM-score: 20.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.177905
    • TAT(Tat/SPI): 0.007419
    • LIPO(Sec/SPII): 0.012197
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ARD37905 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNHLGFGHYGGSLSIVEVLAVLYGEIMPMTPEIFAARDRDYFILSKGHGGPALYSTLYLNGFFDKEFLYSLNTNGTKLPSHPDRNLTPGIDMTTGSLGQGISVATGLAYGQRIRKSPFYTYAIVGDGELNEGQCWEAIQFASHQQLSNLIVFVDDNKKQLDGFTKDICNSGDFVEKFSAFGFESIRVKGSDIREIYEGIVQLKQSNNSSPKCIVLDTIKGQGVQELEEMKSNHHLRPTVEEKQMLTSVVERLSQELEETE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPNHU15_02159&oldid=88063"