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From PneumoWiki
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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 05-OCT-2017

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Expression data
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Streptococcus pneumoniae MDRSPN001
  • locus tag: MDRSPN_01976 [new locus tag: MDRSPN_RS10390 ]
  • pan locus tag?: PNEUPAN003825000
  • symbol: yurO
  • pan gene symbol?: msmE_2
  • synonym:
  • product: putative ABC transporter extracellular-binding protein YurO

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: MDRSPN_01976 [new locus tag: MDRSPN_RS10390 ]
  • symbol: yurO
  • product: putative ABC transporter extracellular-binding protein YurO
  • replicon: chromosome
  • strand: -
  • coordinates: 1962926..1964218
  • length: 1293
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AP018391 (1962926..1964218) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGAACAAAAAAAGTCTTTTGAAATGCGCTGTTATCGGGTTAGTAGCTACCCTTGGTTTA
    GCAGCTTGTGGAACATCTAAGGATGCAAGCGGTGGAAGTTCTTCTGGTAAAGAAGTATTA
    GAATTTTATCATGGGTATCATCATAGTGAAGATGAATGGCCTGTAGCTAAAACTATGCGA
    GATTTATATGATAAATTTGCAGAAGAACATAAAGATAGTGGTGTAGAATTTAAACCAATT
    CCTATAAATGGTGATTTGAAGGATGTAATGAATAACAAGGTTGCTAGTGGTGAATTTCCA
    GATGTGATTGACCTAGCAGGTAATGCAGTATCATTAGCTGCAATTGAACAAAAACTTGTT
    TTAGATTTGAAACCATATATCGATTCAAATAAGCTTGAAAAAAATGTTGGTTTGAACTAT
    AAACAAAACCAAAAAGATGGAAAAATTTATACAGTTCACGAACAGTTATTTACAATGGGC
    TTATGGTACAACAAGGATATATTTGCAAAAGCAGGTGCTAAAACACCTGATCAGTGGAAT
    ACTTGGGAAGATTTTACACAAGCAATGGCTACTGTGAGAAAGCAAGATGGAGTGTATGCA
    TTTGGTGCTGGAGAACCATCTATTCGCTTGTTTAATACAGTCTTAGGAACCACAGAAAAT
    GGGCGTAAATTATTAGACAAACCATTAACAAAAGAAGGAATCGAATCTAAAGAATTTGCA
    GATGCTTTGAAAATGGTTATGAAAGAAATTCAAGCTAATGGTTCTAAGAATGCTGGTGGC
    GATGCTAATGCTTATTCTAAAGACTTCCAAGAAGGTAAATCTGCAGTCTTCTTTAATGGT
    GTGTGGGCTTCTGGTGAGATGTCTAAGAACCCAAGTCTTGCACCTGGAATCTATCCTGCA
    GGTGTAGCAATTAGTTCTTCTGGAGGTGGTATCACTATCTCAAGTAAGATGTCTGAAGCT
    AAACAAAAACTAGCTCTTGAGTTTTTGAAATATATGACTAGCGATGATGTACAAAAAGTA
    ATTTTTGAAAAAGTAGGAGCAAATCCTTCTGATGAAAATGTAAATGTAAAAGAACTTTCA
    GAAAAGAGTTCAGAAGCTACTACTAAAATTTTAGGACAAGCAATCACTCAAGTTAAGAAT
    GCAAAAGTAGTTGTTCCAACTGTAAGTGATGTTTGGGGTGGCGATGTACACACAGCTATT
    ATCAATGCATTGACAGAAAGTGCTGCTGAAAATGTAGATGTTGATCAAAAAGTGAAATCT
    ACTCAAGATGTGTTGAAATCATTGATTGGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1293

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: MDRSPN_01976 [new locus tag: MDRSPN_RS10390 ]
  • symbol: YurO
  • description: putative ABC transporter extracellular-binding protein YurO
  • length: 430
  • theoretical pI: 5.55182
  • theoretical MW: 46495.3
  • GRAVY: -0.347442

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids carbohydrate ABC transporter substrate-binding protein, CPR_0540 family (TIGR03850; HMM-score: 61.3)
    and 1 more
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids carbohydrate ABC transporter, N-acetylglucosamine/diacetylchitobiose-binding protein (TIGR03851; HMM-score: 35.7)
  • TheSEED:
  • ⊞PFAM:
    PBP (CL0177) SBP_bac_8; Bacterial extracellular solute-binding protein (PF13416; HMM-score: 90.2)
    SBP_bac_1; Bacterial extracellular solute-binding protein (PF01547; HMM-score: 76.5)
    and 3 more
    SBP_bac_6; Bacterial extracellular solute-binding protein (PF13343; HMM-score: 19.5)
    no clan defined UPA_2; UPA domain (PF17809; HMM-score: 13.4)
    LppaM (CL0421) LPAM_2; Prokaryotic lipoprotein-attachment site (PF13627; HMM-score: 8.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 2
  • ⊞SignalP: Signal peptide LIPO(Sec/SPII) length 22 aa
    • SP(Sec/SPI): 0.002209
    • TAT(Tat/SPI): 0.000079
    • LIPO(Sec/SPII): 0.997535
    • Cleavage Site: CS pos: 22-23. LAA-CG. Pr: 0.9979
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBA60120 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNKKSLLKCAVIGLVATLGLAACGTSKDASGGSSSGKEVLEFYHGYHHSEDEWPVAKTMRDLYDKFAEEHKDSGVEFKPIPINGDLKDVMNNKVASGEFPDVIDLAGNAVSLAAIEQKLVLDLKPYIDSNKLEKNVGLNYKQNQKDGKIYTVHEQLFTMGLWYNKDIFAKAGAKTPDQWNTWEDFTQAMATVRKQDGVYAFGAGEPSIRLFNTVLGTTENGRKLLDKPLTKEGIESKEFADALKMVMKEIQANGSKNAGGDANAYSKDFQEGKSAVFFNGVWASGEMSKNPSLAPGIYPAGVAISSSGGGITISSKMSEAKQKLALEFLKYMTSDDVQKVIFEKVGANPSDENVNVKELSEKSSEATTKILGQAITQVKNAKVVVPTVSDVWGGDVHTAIINALTESAAENVDVDQKVKSTQDVLKSLIG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=MDRSPN_01976&oldid=109414"
  • This page was last edited on 20 January 2022, at 17:16.
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