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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: MDRSPN_01920 [new locus tag: MDRSPN_RS10095 ]
  • symbol: malC
  • product: maltodextrin transport system permease protein MalC
  • replicon: chromosome
  • strand: +
  • coordinates: 1900413..1901705
  • length: 1293
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: AP018391 (1900413..1901705) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1935 PneumoBrowse

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGGAAAAGCAACAACCTAGTAAAGCAGCCCTGCTGTCTATCATTCCTGGGTTAGGACAG
    ATTTACAATAAACAAAAAGCCAAAGGTTTTATCTTCCTTGGTGTAACCATCGTATTTGTC
    CTTTATTTCCTAGCACTTGCAGCCCCTGAATTGAGCAACCTCATCACTCTTGGTGACAAG
    CCAGGTCGTGACAATTCCCTCTTTATGCTGATTCGCGGTGCCTTCCATTTAATCTTTGTA
    GTCGTTTATGTACTCTTTTATTTCTCAAATATCAAAGATGCACATACGATTGCAAAACGC
    ATTAACAATGGAATTCCAGTTCCACGCACATTCAAAGACATGATCAAAGGGATTTATGAA
    AATGGCTTCCCTTACCTCTTGATCATTCCATCTTATGTTGCCATGACCTTCGCGATTATC
    TTCCCAGTTATCGTAACCTTGATGATCGCCTTTACCAACTATGACTTCCAACACTTACCA
    CCAAACAAATTGTTGGACTGGGTTGGTTTAACAAACTTTAGTAATATCTGGAGCTTGAGT
    ACCTTCCGTTCAGCCTTTGGGTCTGTTCTTTCTTGGACTATCATCTGGGCTTTGGCAGCC
    TCAACTTTACAGATTGTGATTGGTATCTTCACAGCTATCATTGCTAACCAACCATTTATC
    AAAGGAAAACGTATCTTTGGTGTTATTTTCCTTCTTCCTTGGGCTGTCCCAGCCTTCATC
    ACTATCTTGACATTCTCAAACATGTTTAATGATAGTGTCGGAGCTATCAACACTCAAGTA
    TTGCCAATCTTTGCTAAATTCCTTCCTTTCCTTGATGGGGCTCTTATCCCTTGGAAAACA
    GACCCAACTTGGACTAAGATTGCCTTGATTATGATGCAAGGTTGGCTCGGATTCCCATAC
    ATCTACGTTTTGACTTTGGGTATCTTACAATCTATTCCTAACGACCTTTACGAAGCAGCT
    TATATTGACGGTGCTAATGCTTGGCAAAAATTCCGCAACATCACTTTCCCAATGATCTTG
    GCTGTTGCGGCACCTACTTTGATTAGTCAATACACCTTCAACTTTAACAACTTCTCTATC
    ATGTACCTCTTCAATGGTGGAGGTCCTGGTAGTGTCGGTGGTGGAGCTGGTTCAACCGAT
    ATCTTGATCTCATGGATTTACCGTTTGACAACAGGTACATCTCCTCAATACTCAATGGCG
    GCAGCTGTTACTTTGATTATCTCTATCATTGTCATCTCAATCTCTATGATCGCATTCAAG
    AAACTACACGCATTTGATATGGAGGACGTCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1293

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: MDRSPN_01920 [new locus tag: MDRSPN_RS10095 ]
  • symbol: MalC
  • description: maltodextrin transport system permease protein MalC
  • length: 430
  • theoretical pI: 9.798
  • theoretical MW: 47782.2
  • GRAVY: 0.667209

Function[edit | edit source]

  • TIGRFAM:
    NifC-like ABC-type porter (TIGR01581; HMM-score: 35.9)
    Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, permease protein (TIGR03262; HMM-score: 35.6)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein CysT (TIGR02139; HMM-score: 33.3)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein (TIGR00969; HMM-score: 32.5)
    and 3 more
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, permease protein (TIGR02141; HMM-score: 27.4)
    2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 22.3)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein CysW (TIGR02140; HMM-score: 16)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 98)
    and 3 more
    no clan defined DUF5683; Family of unknown function (DUF5683) (PF18935; HMM-score: 26.5)
    DUF6677; Family of unknown function (DUF6677) (PF20382; HMM-score: 13.7)
    TM_PBP2_N; N-terminal of TM subunit in PBP-dependent ABC transporters (PF16296; HMM-score: 11.3)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9998
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0002
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.067118
    • TAT(Tat/SPI): 0.001654
    • LIPO(Sec/SPII): 0.003607
  • predicted transmembrane helices (TMHMM): 8

Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBA60064 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MEKQQPSKAALLSIIPGLGQIYNKQKAKGFIFLGVTIVFVLYFLALAAPELSNLITLGDKPGRDNSLFMLIRGAFHLIFVVVYVLFYFSNIKDAHTIAKRINNGIPVPRTFKDMIKGIYENGFPYLLIIPSYVAMTFAIIFPVIVTLMIAFTNYDFQHLPPNKLLDWVGLTNFSNIWSLSTFRSAFGSVLSWTIIWALAASTLQIVIGIFTAIIANQPFIKGKRIFGVIFLLPWAVPAFITILTFSNMFNDSVGAINTQVLPIFAKFLPFLDGALIPWKTDPTWTKIALIMMQGWLGFPYIYVLTLGILQSIPNDLYEAAYIDGANAWQKFRNITFPMILAVAAPTLISQYTFNFNNFSIMYLFNGGGPGSVGGGAGSTDILISWIYRLTTGTSPQYSMAAAVTLIISIIVISISMIAFKKLHAFDMEDV

Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

Expression data[edit | edit source]

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]

NCBI: 05-OCT-2017

Summary[edit | edit source]

  • organism: Streptococcus pneumoniae MDRSPN001
  • locus tag: MDRSPN_01920 [new locus tag: MDRSPN_RS10095 ]
  • pan locus tag?: PNEUPAN003777000
  • symbol: malC
  • pan gene symbol?: malC
  • synonym:
  • product: maltodextrin transport system permease protein MalC

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: MDRSPN_01920 [new locus tag: MDRSPN_RS10095 ]
  • symbol: malC
  • product: maltodextrin transport system permease protein MalC
  • replicon: chromosome
  • strand: +
  • coordinates: 1900413..1901705
  • length: 1293
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: AP018391 (1900413..1901705) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1935 PneumoBrowse

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGGAAAAGCAACAACCTAGTAAAGCAGCCCTGCTGTCTATCATTCCTGGGTTAGGACAG
    ATTTACAATAAACAAAAAGCCAAAGGTTTTATCTTCCTTGGTGTAACCATCGTATTTGTC
    CTTTATTTCCTAGCACTTGCAGCCCCTGAATTGAGCAACCTCATCACTCTTGGTGACAAG
    CCAGGTCGTGACAATTCCCTCTTTATGCTGATTCGCGGTGCCTTCCATTTAATCTTTGTA
    GTCGTTTATGTACTCTTTTATTTCTCAAATATCAAAGATGCACATACGATTGCAAAACGC
    ATTAACAATGGAATTCCAGTTCCACGCACATTCAAAGACATGATCAAAGGGATTTATGAA
    AATGGCTTCCCTTACCTCTTGATCATTCCATCTTATGTTGCCATGACCTTCGCGATTATC
    TTCCCAGTTATCGTAACCTTGATGATCGCCTTTACCAACTATGACTTCCAACACTTACCA
    CCAAACAAATTGTTGGACTGGGTTGGTTTAACAAACTTTAGTAATATCTGGAGCTTGAGT
    ACCTTCCGTTCAGCCTTTGGGTCTGTTCTTTCTTGGACTATCATCTGGGCTTTGGCAGCC
    TCAACTTTACAGATTGTGATTGGTATCTTCACAGCTATCATTGCTAACCAACCATTTATC
    AAAGGAAAACGTATCTTTGGTGTTATTTTCCTTCTTCCTTGGGCTGTCCCAGCCTTCATC
    ACTATCTTGACATTCTCAAACATGTTTAATGATAGTGTCGGAGCTATCAACACTCAAGTA
    TTGCCAATCTTTGCTAAATTCCTTCCTTTCCTTGATGGGGCTCTTATCCCTTGGAAAACA
    GACCCAACTTGGACTAAGATTGCCTTGATTATGATGCAAGGTTGGCTCGGATTCCCATAC
    ATCTACGTTTTGACTTTGGGTATCTTACAATCTATTCCTAACGACCTTTACGAAGCAGCT
    TATATTGACGGTGCTAATGCTTGGCAAAAATTCCGCAACATCACTTTCCCAATGATCTTG
    GCTGTTGCGGCACCTACTTTGATTAGTCAATACACCTTCAACTTTAACAACTTCTCTATC
    ATGTACCTCTTCAATGGTGGAGGTCCTGGTAGTGTCGGTGGTGGAGCTGGTTCAACCGAT
    ATCTTGATCTCATGGATTTACCGTTTGACAACAGGTACATCTCCTCAATACTCAATGGCG
    GCAGCTGTTACTTTGATTATCTCTATCATTGTCATCTCAATCTCTATGATCGCATTCAAG
    AAACTACACGCATTTGATATGGAGGACGTCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1293

This data comes from external databases and cannot be edited.

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: MDRSPN_01920 [new locus tag: MDRSPN_RS10095 ]
  • symbol: MalC
  • description: maltodextrin transport system permease protein MalC
  • length: 430
  • theoretical pI: 9.798
  • theoretical MW: 47782.2
  • GRAVY: 0.667209

Function[edit | edit source]

  • TIGRFAM:
    NifC-like ABC-type porter (TIGR01581; HMM-score: 35.9)
    Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, permease protein (TIGR03262; HMM-score: 35.6)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein CysT (TIGR02139; HMM-score: 33.3)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein (TIGR00969; HMM-score: 32.5)
    and 3 more
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, permease protein (TIGR02141; HMM-score: 27.4)
    2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 22.3)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein CysW (TIGR02140; HMM-score: 16)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 98)
    and 3 more
    no clan defined DUF5683; Family of unknown function (DUF5683) (PF18935; HMM-score: 26.5)
    DUF6677; Family of unknown function (DUF6677) (PF20382; HMM-score: 13.7)
    TM_PBP2_N; N-terminal of TM subunit in PBP-dependent ABC transporters (PF16296; HMM-score: 11.3)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9998
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0002
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.067118
    • TAT(Tat/SPI): 0.001654
    • LIPO(Sec/SPII): 0.003607
  • predicted transmembrane helices (TMHMM): 8

Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBA60064 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MEKQQPSKAALLSIIPGLGQIYNKQKAKGFIFLGVTIVFVLYFLALAAPELSNLITLGDKPGRDNSLFMLIRGAFHLIFVVVYVLFYFSNIKDAHTIAKRINNGIPVPRTFKDMIKGIYENGFPYLLIIPSYVAMTFAIIFPVIVTLMIAFTNYDFQHLPPNKLLDWVGLTNFSNIWSLSTFRSAFGSVLSWTIIWALAASTLQIVIGIFTAIIANQPFIKGKRIFGVIFLLPWAVPAFITILTFSNMFNDSVGAINTQVLPIFAKFLPFLDGALIPWKTDPTWTKIALIMMQGWLGFPYIYVLTLGILQSIPNDLYEAAYIDGANAWQKFRNITFPMILAVAAPTLISQYTFNFNNFSIMYLFNGGGPGSVGGGAGSTDILISWIYRLTTGTSPQYSMAAAVTLIISIIVISISMIAFKKLHAFDMEDV

Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

Expression data[edit | edit source]

Biological Material[edit | edit source]

Other Information[edit | edit source]

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]