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From PneumoWiki
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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Expression data
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Streptococcus pneumoniae Hungary19A-6
  • locus tag: SPH_0608 [new locus tag: SPH_RS02945 ]
  • pan locus tag?: PNEUPAN001404000
  • symbol: pgk
  • pan gene symbol?: pgk
  • synonym:
  • product: phosphoglycerate kinase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPH_0608 [new locus tag: SPH_RS02945 ]
  • symbol: pgk
  • product: phosphoglycerate kinase
  • replicon: chromosome
  • strand: +
  • coordinates: 560896..562092
  • length: 1197
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: CP000936 (560896..562092) NCBI
  • BioCyc: see SPH_RS02945
  • MicrobesOnline: 5695454 MicrobesOnline
  • PneumoBrowse for strain D39V: SPV_0445 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGGCAAAACTTACTGTTAAAGACGTTGACTTGAAAGGTAAAAAAGTCCTCGTTCGTGTT
    GACTTCAACGTACCATTGAAAGATGGCGTAATCACTAACGATAACCGTATCACAGCAGCT
    CTTCCAACTATTAAGTACATCATCGAACAAGGTGGACGTGCAATTCTTTTCTCTCACCTT
    GGACGTGTGAAAGAAGAAGCTGATAAAGCTGGCAAATCACTTGCTCCTGTAGCAGCTGAC
    TTGGCAGCAAAACTTGGTCAAGATGTTGTTTTCCCAGGTGTCACTCGTGGTGCTGAATTG
    GAAGCGGCAATCAACGCTCTTGAAGATGGACAAGTTCTCTTGGTTGAAAACACTCGTTAC
    GAAGATGTTGACGGCAAGAAAGAATCTAAAAACGATCCTGAACTTGGTAAATACTGGGCA
    TCACTTGGAGATGGTATCTTCGTAAACGATGCATTCGGTACAGCTCACCGTGCACACGCA
    TCTAACGTTGGTATCTCAGCAAACGTTGAAAAAGCAGTTGCTGGTTTCCTTCTTGAAAAC
    GAAATTGCCTACATCCAAGAAGCAGTTGAAACTCCAGAACGTCCATTCGTGGCTATCCTT
    GGTGGTTCAAAAGTTTCAGACAAGATCGGTGTTATCGAAAACTTGCTTGAAAAAGCTGAT
    AAAGTCCTTATCGGTGGTGGGATGACTTACACATTCTACAAAGCACAAGGTATCGAAATC
    GGTAACTCACTTGTAGAAGAAGACAAATTGGATGTTGCGAAAGCTCTTCTTGAAAAAGCA
    AATGGTAAATTGATCTTGCCAGTTGACTCAAAAGAAGCTAACGCATTTGCTGGTTACACT
    GAAGTGCGTGACACTGAAGGTGAAGCAGTTTCTGAAGGCTTCCTTGGTCTTGACATCGGT
    CCAAAATCTATCGCCAAATTTGACGAAGCTTTGACTGGTGCCAAAACAGTTGTATGGAAC
    GGACCTATGGGTGTATTTGAAAACCCAGATTTCCAAGCTGGTACAATCGGTGTGATGGAC
    GCTATCGTGAAACAACCAGGAGTTAAATCAATCATCGGTGGTGGTGACTCAGCTGCCGCA
    GCGATTAACCTTGGCCGTGCAGACAAGTTCTCATGGATTAGTACGGGTGGTGGAGCATCA
    ATGGAACTTCTTGAAGGTAAGGTTCTTCCAGGACTTGCAGCCTTGACAGAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1197

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPH_0608 [new locus tag: SPH_RS02945 ]
  • symbol: Pgk
  • description: phosphoglycerate kinase
  • length: 398
  • theoretical pI: 4.65005
  • theoretical MW: 41922.5
  • GRAVY: -0.0170854

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 2.7.2.3?  ExPASy
    Phosphoglycerate kinase ATP + 3-phospho-D-glycerate = ADP + 3-phospho-D-glyceroyl phosphate
  • TIGRFAM:
  • ⊞TheSEED  :
    • Phosphoglycerate kinase (EC 2.7.2.3)
    Carbohydrates Central carbohydrate metabolism Entner-Doudoroff Pathway  Phosphoglycerate kinase (EC 2.7.2.3)
    and 1 more
    Carbohydrates Central carbohydrate metabolism Glycolysis and Gluconeogenesis  Phosphoglycerate kinase (EC 2.7.2.3)
  • PFAM:
    no clan defined PGK; Phosphoglycerate kinase (PF00162; HMM-score: 476.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001385
    • TAT(Tat/SPI): 0.000086
    • LIPO(Sec/SPII): 0.000243
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACA37613 NCBI
  • UniProt: B1IA36 UniProt

⊟Protein sequence[edit | edit source]

  • MAKLTVKDVDLKGKKVLVRVDFNVPLKDGVITNDNRITAALPTIKYIIEQGGRAILFSHLGRVKEEADKAGKSLAPVAADLAAKLGQDVVFPGVTRGAELEAAINALEDGQVLLVENTRYEDVDGKKESKNDPELGKYWASLGDGIFVNDAFGTAHRAHASNVGISANVEKAVAGFLLENEIAYIQEAVETPERPFVAILGGSKVSDKIGVIENLLEKADKVLIGGGMTYTFYKAQGIEIGNSLVEEDKLDVAKALLEKANGKLILPVDSKEANAFAGYTEVRDTEGEAVSEGFLGLDIGPKSIAKFDEALTGAKTVVWNGPMGVFENPDFQAGTIGVMDAIVKQPGVKSIIGGGDSAAAAINLGRADKFSWISTGGGASMELLEGKVLPGLAALTEK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

  • MicrobesOnline: SPH_0607 > pgk

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V: SPV_0445 PneumoExpress

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

M Fulde, N Bernardo-García, M Rohde, N Nachtigall, R Frank, K T Preissner, J Klett, A Morreale, G S Chhatwal, J A Hermoso, S Bergmann
Pneumococcal phosphoglycerate kinase interacts with plasminogen and its tissue activator.
Thromb Haemost: 2014, 111(3);401-16
[PubMed:24196407] [WorldCat.org] [DOI] (I p)

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPH_0608&oldid=11552"
  • This page was last edited on 20 January 2022, at 13:30.
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