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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 24-APR-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Hungary19A-6
- locus tag: SPH_RS08935 [old locus tag: SPH_1834 ]
- pan locus tag?: PNEUPAN003135000
- symbol: SPH_RS08935
- pan gene symbol?: scrR
- synonym:
- product: LacI family DNA-binding transcriptional regulator
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS, pseudogene
- locus tag: SPH_RS08935 [old locus tag: SPH_1834 ]
- symbol: SPH_RS08935
- product: LacI family DNA-binding transcriptional regulator
- replicon: chromosome
- strand: +
- coordinates: 1695884..1696848
- length: 965
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_010380 (1695884..1696848) NCBI
- BioCyc: SPH_RS08935 BioCyc
- MicrobesOnline: see SPH_1834
- PneumoBrowse for strain D39V: SPV_1535 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961ATGGTCGCAAAACTAACTGATGTCGCCAAACTTGCAGGCGTCAGTCCTACTACCGTTTCT
CGGGTTATCAATAAAAAAGGGTATCTATCTGAGAAAACCATCCAAAAAGTCAATGAAGCC
ATGCGAGAATTGGGCTATAAACCCAACAACCTGGCTCGTAGTCTGCAAGGAAAATCAGCT
AAGTTAATCGGCTTGATTTTCCCCAATATTTCCAATGTTTTCTATGCAGAATTGATTGAT
AAATTGGAACACCAACTCTTCAAAAATGGTTACAAGACCATCATCTGCAACAGTGAACAT
GATTCTGAGAAGGAACGTGAATACATCGAAATGTTGGAAGCCAATCAGGTGGACGGCATC
ATTTCTGGTAGTCACAACCTAGGAATCGAAGACTACAATCGTGTGACAGCGCCGATTATT
TCCTTTGACCGAAACCTATCGCCAGACATCCCTGTTGTCTCCTCTGACAACTATGCTGGT
GGGGTTCTTGCTGCCCAAACCTTGGTCAAGACAGGTGCCCAGTCTATCATCATGATTACA
GGGAATGACAATTCCAATTCGCCAACCGGACTGCGCCACGCTGGTTTTGCATCCGTACTC
CCAAAAGCTCCTATTATCAATGTTTCCATTTCTTTTCTCCCGTCAGAAAAGAAATGGAAA
TCAAGAATATCTTGACCCGGGAAAAACCAGATGCCATTTTTGCTTCGGATGATTTGACAG
CTATTCTGGTCATTAAAATCGCTCAAGAATTGGGCATTTCTGTCCCAAAAGAGCTCAAGG
TCATCGGCTATGATGGGACCTACTTTATCGAAAATTACTACCCTCAATTGGCTACTATCA
AGCAACCTTTGGAAGAGATTGCTTGTCTCACTATTGATCTTCTCTTGCAAAAGATTGAAG
GCAAGGAAGTCGCCACAACTGGTTACTTCTTACCAGTTACGCTATTACCAGGAAAAAGTA
TTTAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
965
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPH_RS08935 [old locus tag: SPH_1834 ]
- symbol: SPH_RS08935
- description: LacI family DNA-binding transcriptional regulator
- length:
- theoretical pI:
- theoretical MW:
- GRAVY:
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
- genes regulated by ScrR, TF important in Sucrose utilization: in TIGR4
⊟Localization[edit | edit source]
- PSORTb:
- SignalP:
- predicted transmembrane helices (TMHMM):
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1535 PneumoExpress
⊞Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊞Other Information[edit | edit source]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
Ramkumar Iyer, Andrew Camilli
Sucrose metabolism contributes to in vivo fitness of Streptococcus pneumoniae.
Mol Microbiol: 2007, 66(1);1-13
[PubMed:17880421] [WorldCat.org] [DOI] (P p)
NCBI: 24-APR-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Hungary19A-6
- locus tag: SPH_RS08935 [old locus tag: SPH_1834 ]
- pan locus tag?: PNEUPAN003135000
- symbol: SPH_RS08935
- pan gene symbol?: scrR
- synonym:
- product: LacI family DNA-binding transcriptional regulator
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS, pseudogene
- locus tag: SPH_RS08935 [old locus tag: SPH_1834 ]
- symbol: SPH_RS08935
- product: LacI family DNA-binding transcriptional regulator
- replicon: chromosome
- strand: +
- coordinates: 1695884..1696848
- length: 965
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_010380 (1695884..1696848) NCBI
- BioCyc: SPH_RS08935 BioCyc
- MicrobesOnline: see SPH_1834
- PneumoBrowse for strain D39V: SPV_1535 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit
]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961ATGGTCGCAAAACTAACTGATGTCGCCAAACTTGCAGGCGTCAGTCCTACTACCGTTTCT
CGGGTTATCAATAAAAAAGGGTATCTATCTGAGAAAACCATCCAAAAAGTCAATGAAGCC
ATGCGAGAATTGGGCTATAAACCCAACAACCTGGCTCGTAGTCTGCAAGGAAAATCAGCT
AAGTTAATCGGCTTGATTTTCCCCAATATTTCCAATGTTTTCTATGCAGAATTGATTGAT
AAATTGGAACACCAACTCTTCAAAAATGGTTACAAGACCATCATCTGCAACAGTGAACAT
GATTCTGAGAAGGAACGTGAATACATCGAAATGTTGGAAGCCAATCAGGTGGACGGCATC
ATTTCTGGTAGTCACAACCTAGGAATCGAAGACTACAATCGTGTGACAGCGCCGATTATT
TCCTTTGACCGAAACCTATCGCCAGACATCCCTGTTGTCTCCTCTGACAACTATGCTGGT
GGGGTTCTTGCTGCCCAAACCTTGGTCAAGACAGGTGCCCAGTCTATCATCATGATTACA
GGGAATGACAATTCCAATTCGCCAACCGGACTGCGCCACGCTGGTTTTGCATCCGTACTC
CCAAAAGCTCCTATTATCAATGTTTCCATTTCTTTTCTCCCGTCAGAAAAGAAATGGAAA
TCAAGAATATCTTGACCCGGGAAAAACCAGATGCCATTTTTGCTTCGGATGATTTGACAG
CTATTCTGGTCATTAAAATCGCTCAAGAATTGGGCATTTCTGTCCCAAAAGAGCTCAAGG
TCATCGGCTATGATGGGACCTACTTTATCGAAAATTACTACCCTCAATTGGCTACTATCA
AGCAACCTTTGGAAGAGATTGCTTGTCTCACTATTGATCTTCTCTTGCAAAAGATTGAAG
GCAAGGAAGTCGCCACAACTGGTTACTTCTTACCAGTTACGCTATTACCAGGAAAAAGTA
TTTAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
965
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPH_RS08935 [old locus tag: SPH_1834 ]
- symbol: SPH_RS08935
- description: LacI family DNA-binding transcriptional regulator
- length:
- theoretical pI:
- theoretical MW:
- GRAVY:
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
- genes regulated by ScrR, TF important in Sucrose utilization: in TIGR4
⊟Localization[edit | edit source]
- PSORTb:
- SignalP:
- predicted transmembrane helices (TMHMM):
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1535 PneumoExpress
⊞Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊞Other Information[edit | edit source]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
Ramkumar Iyer, Andrew Camilli
Sucrose metabolism contributes to in vivo fitness of Streptococcus pneumoniae.
Mol Microbiol: 2007, 66(1);1-13
[PubMed:17880421] [WorldCat.org] [DOI] (P p)