⊟Summary[edit | edit source]

PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

NCBI: 20-DEC-2020

⊟Summary

• organism: Streptococcus pneumoniae OXC141
locus tag: SPNOXC_RS03640 [old locus tags: SPNOXC06820 SPNOXC_06820 ]
pan locus tag^?: PNEUPAN001715000
symbol: SPNOXC_RS03640
pan gene symbol^?: livF
• synonym:
• product: ABC transporter ATP-binding protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SPNOXC_RS03640 [old locus tags: SPNOXC06820 SPNOXC_06820 ]
• symbol: SPNOXC_RS03640
• product: ABC transporter ATP-binding protein
• replicon: chromosome
• strand: +
• coordinates: 682129..682839
• length: 711
• essential: unknown

⊟Accession numbers

• Location: NC_017592 (682129..682839) NCBI
• BioCyc: SPNOXC_RS03640 BioCyc
• MicrobesOnline:
• PneumoBrowse for strain D39V: SPV_0656 PneumoBrowse

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  481
  541
  601
  661
  
  ATGTCTATGTTAAAAGTTGAAAATCTTTCTGTGCATTACGGTATGATCCAAGCAGTTCGT
  GATGTAAGCTTTGAAGTTAATGAAGGAGAAGTTGTTTCCCTTATCGGTGCCAACGGTGCA
  GGTAAGACAACTATTCTTCGCACCTTGTCAGGTTTGGTTCGACCAAGTTCAGGAAAGATT
  GAATTTTTAGGTCAAGAAATCCAAAAAATGCCAGCTCAGAAAATCGTGGCAAGTGGTCTT
  TCACAAGTTCCAGAAGGACGCCACGTCTTTCCTGGCTTGACTGTTATGGAAAATCTTGAA
  ATGGGAGCTTTCTTAAAGAAAAATCGTGAAGAAAATCAAGCTAACTTGAAGAAGGTTTTC
  TCACGCTTTCCTCGTCTTGAAGAACGGAAGAACCAAGATGCAGCCACTCTTTCAGGGGGG
  GAACAACAAATGCTTGCCATGGGACGCGCCCTCATGTCAACACCAAAACTTCTTCTTTTA
  GATGAACCATCAATGGGACTTGCCCCAATCTTTATCCAAGAAATTTTTGATATCATTCAA
  GATATTCAGAAGCAAGGAACAACGGTCCTCTTGATTGAACAAAATGCCAATAAAGCACTT
  GCAATCTCTGACCGAGGATATGTACTGGAAACAGGGAAAATCGTCCTATCAGGAACAGGA
  AAAGAACTCGCTTCATCAGAAGAAGTCAGAAAAGCATATCTAGGTGGCTAA
  60
  120
  180
  240
  300
  360
  420
  480
  540
  600
  660
  711
  

⊟Protein

⊟General

• locus tag: SPNOXC_RS03640 [old locus tags: SPNOXC06820 SPNOXC_06820 ]
• symbol: SPNOXC_RS03640
• description: ABC transporter ATP-binding protein
• length: 236
• theoretical pI: 7.67922
• theoretical MW: 25716.6
• GRAVY: -0.110169

⊟Function

• ⊞⊞TIGRFAM:
  Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtE (TIGR03410; HMM-score: 225.8)
  Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 187)
  Metabolism Transport and binding proteins Other LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 187)
  and 73 more
  Metabolism Transport and binding proteins Other daunorubicin resistance ABC transporter, ATP-binding protein (TIGR01188; HMM-score: 159.3)
  Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtD (TIGR03411; HMM-score: 155.1)
  Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TIGR03265; HMM-score: 142.8)
  Metabolism Transport and binding proteins Anions phosphonate ABC transporter, ATP-binding protein (TIGR02315; EC 3.6.3.28; HMM-score: 131)
  Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system (TIGR03864; HMM-score: 130)
  Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04521; EC 3.6.3.-; HMM-score: 122)
  Metabolism Transport and binding proteins Anions phosphate ABC transporter, ATP-binding protein (TIGR00972; EC 3.6.3.27; HMM-score: 121.8)
  Genetic information processing Protein fate Protein and peptide secretion and trafficking lipoprotein releasing system, ATP-binding protein (TIGR02211; EC 3.6.3.-; HMM-score: 121.5)
  Metabolism Transport and binding proteins Amino acids, peptides and amines glycine betaine/L-proline transport ATP binding subunit (TIGR01186; HMM-score: 120.8)
  Cellular processes Cellular processes Cell division cell division ATP-binding protein FtsE (TIGR02673; HMM-score: 120.1)
  Metabolism Transport and binding proteins Anions sulfate ABC transporter, ATP-binding protein (TIGR00968; EC 3.6.3.25; HMM-score: 119.9)
  lantibiotic protection ABC transporter, ATP-binding subunit (TIGR03740; HMM-score: 118.8)
  gliding motility-associated ABC transporter ATP-binding subunit GldA (TIGR03522; HMM-score: 113.4)
  ABC exporter ATP-binding subunit, DevA family (TIGR02982; HMM-score: 112.7)
  2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT (TIGR03258; HMM-score: 112.7)
  proposed F420-0 ABC transporter, ATP-binding protein (TIGR03873; HMM-score: 112.1)
  Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04520; EC 3.6.3.-; HMM-score: 110.4)
  Cellular processes Cellular processes Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 110)
  Metabolism Transport and binding proteins Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 110)
  Metabolism Transport and binding proteins Amino acids, peptides and amines polyamine ABC transporter, ATP-binding protein (TIGR01187; EC 3.6.3.31; HMM-score: 109.2)
  thiol reductant ABC exporter, CydD subunit (TIGR02857; HMM-score: 109.2)
  Cellular processes Cellular processes Toxin production and resistance putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 108.6)
  Metabolism Transport and binding proteins Unknown substrate putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 108.6)
  Cellular processes Cellular processes Pathogenesis type I secretion system ATPase (TIGR03375; HMM-score: 108)
  Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR03375; HMM-score: 108)
  Metabolism Transport and binding proteins Anions molybdate ABC transporter, ATP-binding protein (TIGR02142; EC 3.6.3.29; HMM-score: 107.7)
  thiol reductant ABC exporter, CydC subunit (TIGR02868; HMM-score: 105.5)
  Genetic information processing Protein fate Protein and peptide secretion and trafficking heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 100.7)
  Metabolism Transport and binding proteins Other heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 100.7)
  Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids D-xylose ABC transporter, ATP-binding protein (TIGR02633; EC 3.6.3.17; HMM-score: 99.6)
  Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 95.8)
  Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 95.8)
  Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01842; HMM-score: 94.7)
  D-methionine ABC transporter, ATP-binding protein (TIGR02314; EC 3.6.3.-; HMM-score: 94.2)
  Metabolism Transport and binding proteins Other thiamine ABC transporter, ATP-binding protein (TIGR01277; EC 3.6.3.-; HMM-score: 93.3)
  ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA (TIGR03005; HMM-score: 92.4)
  Metabolism Transport and binding proteins Unknown substrate anchored repeat-type ABC transporter, ATP-binding subunit (TIGR03771; HMM-score: 91.6)
  Metabolism Transport and binding proteins Anions nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 91.5)
  Metabolism Transport and binding proteins Other nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 91.5)
  ABC transporter, permease/ATP-binding protein (TIGR02204; HMM-score: 90.3)
  Metabolism Transport and binding proteins Cations and iron carrying compounds cobalt ABC transporter, ATP-binding protein (TIGR01166; HMM-score: 90.2)
  Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 89.7)
  Metabolism Transport and binding proteins Other lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 89.7)
  Metabolism Energy metabolism Methanogenesis methyl coenzyme M reductase system, component A2 (TIGR03269; HMM-score: 87.3)
  Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikE (TIGR02769; EC 3.6.3.24; HMM-score: 87.2)
  phosphonate C-P lyase system protein PhnL (TIGR02324; HMM-score: 85.6)
  Metabolism Transport and binding proteins Amino acids, peptides and amines choline ABC transporter, ATP-binding protein (TIGR03415; HMM-score: 83.9)
  Metabolism Transport and binding proteins Other pigment precursor permease (TIGR00955; HMM-score: 82.5)
  Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 82)
  Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 82)
  Genetic information processing Protein fate Protein and peptide secretion and trafficking ABC-type bacteriocin transporter (TIGR01193; HMM-score: 81)
  Genetic information processing Protein fate Protein modification and repair ABC-type bacteriocin transporter (TIGR01193; HMM-score: 81)
  Metabolism Transport and binding proteins Other ABC-type bacteriocin transporter (TIGR01193; HMM-score: 81)
  Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other FeS assembly ATPase SufC (TIGR01978; HMM-score: 78.5)
  Metabolism Transport and binding proteins Other rim ABC transporter (TIGR01257; HMM-score: 77.3)
  Metabolism Central intermediary metabolism Phosphorus compounds phosphonate C-P lyase system protein PhnK (TIGR02323; HMM-score: 72.8)
  Metabolism Transport and binding proteins Other antigen peptide transporter 2 (TIGR00958; HMM-score: 68.7)
  Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikD (TIGR02770; HMM-score: 66.9)
  ATP-binding cassette protein, ChvD family (TIGR03719; HMM-score: 64.8)
  Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01846; HMM-score: 64.5)
  Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids glucan exporter ATP-binding protein (TIGR01192; EC 3.6.3.42; HMM-score: 61.4)
  Metabolism Transport and binding proteins Anions cystic fibrosis transmembrane conductor regulator (CFTR) (TIGR01271; EC 3.6.3.49; HMM-score: 56.9)
  Metabolism Transport and binding proteins Amino acids, peptides and amines cyclic peptide transporter (TIGR01194; HMM-score: 46)
  Metabolism Transport and binding proteins Other cyclic peptide transporter (TIGR01194; HMM-score: 46)
  Genetic information processing DNA metabolism DNA replication, recombination, and repair excinuclease ABC subunit A (TIGR00630; EC 3.1.25.-; HMM-score: 39.7)
  Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids peroxysomal long chain fatty acyl transporter (TIGR00954; HMM-score: 38.4)
  Metabolism Transport and binding proteins Other multi drug resistance-associated protein (MRP) (TIGR00957; HMM-score: 37.4)
  Metabolism Transport and binding proteins Other pleiotropic drug resistance family protein (TIGR00956; HMM-score: 36.2)
  restriction system-associated AAA family ATPase (TIGR04435; HMM-score: 18.3)
  Genetic information processing DNA metabolism Restriction/modification DNA sulfur modification protein DndD (TIGR03185; HMM-score: 16.1)
  Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA threonylcarbamoyl adenosine modification protein YjeE (TIGR00150; HMM-score: 13.3)
  Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA replication and repair protein RecF (TIGR00611; HMM-score: 12.8)
  Genetic information processing Protein fate Protein and peptide secretion and trafficking signal recognition particle-docking protein FtsY (TIGR00064; HMM-score: 11.6)
• TheSEED: see SPNOXC06820
• ⊞⊞PFAM:
  P-loop_NTPase (CL0023) ABC_tran; ABC transporter (PF00005; HMM-score: 113.2)
  and 21 more
  AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 45.8)
  AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 21.3)
  AAA_23; AAA domain (PF13476; HMM-score: 20.5)
  AAA_30; AAA domain (PF13604; HMM-score: 18.6)
  AAA_15; AAA ATPase domain (PF13175; HMM-score: 16.9)
  AAA_16; AAA ATPase domain (PF13191; HMM-score: 16.6)
  BCA_ABC_TP_C; Branched-chain amino acid ATP-binding cassette transporter (PF12399; HMM-score: 14.9)
  AAA_27; AAA domain (PF13514; HMM-score: 14.7)
  AAA_28; AAA domain (PF13521; HMM-score: 14.2)
  SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 14)
  TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 13.8)
  RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 13.6)
  AAA_33; AAA domain (PF13671; HMM-score: 13.1)
  AAA_22; AAA domain (PF13401; HMM-score: 13)
  SbcC_Walker_B; SbcC/RAD50-like, Walker B motif (PF13558; HMM-score: 13)
  DO-GTPase2; Double-GTPase 2 (PF19993; HMM-score: 13)
  Mg_chelatase; Magnesium chelatase, subunit ChlI (PF01078; HMM-score: 12.4)
  MMR_HSR1; 50S ribosome-binding GTPase (PF01926; HMM-score: 12.3)
  AAA_25; AAA domain (PF13481; HMM-score: 12.2)
  AAA_13; AAA domain (PF13166; HMM-score: 10.3)
  DUF3584; Protein of unknown function (DUF3584) (PF12128; HMM-score: 9.1)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞⊞PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0.04
  • Cytoplasmic Membrane Score: 9.96
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 0
• ⊞⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.004601
  • TAT(Tat/SPI): 0.000628
  • LIPO(Sec/SPII): 0.000432
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI:
• RefSeq: WP_000062223 NCBI
• UniProt:

⊟Protein sequence

• MSMLKVENLSVHYGMIQAVRDVSFEVNEGEVVSLIGANGAGKTTILRTLSGLVRPSSGKIEFLGQEIQKMPAQKIVASGLSQVPEGRHVFPGLTVMENLEMGAFLKKNREENQANLKKVFSRFPRLEERKNQDAATLSGGEQQMLAMGRALMSTPKLLLLDEPSMGLAPIFIQEIFDIIQDIQKQGTTVLLIEQNANKALAISDRGYVLETGKIVLSGTGKELASSEEVRKAYLGG

⊟Experimental data

• protein localization:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• data available for TIGR4

⊟Expression data

• PneumoExpress for strain D39V: SPV_0656 PneumoExpress

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications