Navigation

  • Main page
  • Downloads
  • Strains
  • Getting Started
  • Recent changes
  • Random page
  • What links here
  • Related changes
  • Special pages
  • Printable version
  • Permanent link
  • Page information

personal-loginout

  • Log in
  • Not logged in
  • Talk
  • Contributions
  • Create account

Search

?

Navigation menu

Namespaces
  • Page
  • Discussion
English
From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 02-AUG-2013

Views
  • Read
  • Edit
  • History
  • Edit source

⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Expression data
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Streptococcus pneumoniae gamPNI0373
  • locus tag: HMPREF1038_00224 [new locus tag: HMPREF1038_RS01095 ]
  • pan locus tag?: PNEUPAN000882000
  • symbol: HMPREF1038_00224
  • pan gene symbol?: dapE
  • synonym:
  • product: peptidase, M20/M25/M40 family

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: HMPREF1038_00224 [new locus tag: HMPREF1038_RS01095 ]
  • symbol: HMPREF1038_00224
  • product: peptidase, M20/M25/M40 family
  • replicon: chromosome
  • strand: +
  • coordinates: 184413..185786
  • length: 1374
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP001845 (184413..185786) NCBI
  • BioCyc: see HMPREF1038_RS01095
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0152 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGTTTTTTCCTAGCGAACAAGAACAGATTGAAAAATTTGAAAAGGATCATGTAGCCCAG
    CATTATTTTGAGGTTTTGCGTACCTTGATTTCTAAGAAATCAGTCTTTGCCCAGCAGGTT
    GGACTCAAGGAAGTCGCAAACTATCTGGGTGAGATTTTCAAGCGTGTTGGAGCTGAAGTG
    GAGATTGATGAGAGCTATACAGCGCCCTTTGTCATGGCACATTTCAAGAGTTCGCGTCCA
    GATGCCAAGACCTTGATTTTCTATAACCACTATGACACTGTGCCAGCGGATGGGGATCAG
    GTCTGGACAGAGGATCCTTTTACGCTTTCGGTCCGCAATGGCTTCATGTATGGGCGTGGG
    GTTGATGACGACAAGGGTCATATCACAGCTCGCTTGAGTGCTTTGAGAAAATATATGCAG
    CACCATGATGATTTACCTGTCAATATCAGCTTTATCATGGAGGGAGCGGAGGAATCGGCT
    TCAACAGACCTAGATAAGTATTTGGAAAAGCATGCAGACAAACTCTGTGGGGCGGATTTG
    TTGGTCTGGGAACAAGGGACCAAAAATGCCTTGGAACAGCTGGAAATTTCTGGTGGCAAT
    AAGGGAATTGTGACCTTTGATGCCAAGGTAAAAAGCGCTGATGTGGATATCCACTCGAGT
    TATGGTGGTGTTGTGGAATCAGCTCCTTGGTATCTCCTCCAAGCCTTACAGTCTCTTCGT
    GCTGCGGATGGCCGTATCTTGGTTGAAGGCTTGTACGAAGAAGTACAAGAGCCCAATGAA
    CGAGAAATGGCCTTGCTAGAAACTTATGGTCAACGAAACCCAGAGGAAGTTAGTCGGATT
    TATGGATTGGAGTTGCCTCTCTTACAGGAGGAGCGGATGGCCTTTCTAAAACGTTTCTTT
    TTCGAGCCAGCGCTTAATATCGAAGGAATCCAGTCTGGTTATCAAGGTCAGGGTGTTAAG
    ACTATTTTACCTGCAGAAGCCAGTGCAAAGCTAGAGGTTCGTCTGGTTCCGGGCCTAGAA
    CCGCATGATGTTCTGGAAAAAATTCGGAAACAACTAGACAAAAATGGCTTTGATAAGGTA
    GAATTATACTATACCTTGGGAGAGATGAGCTATCGAAGCGATATGAGCGCACCAGCCATT
    CTCAATGTGATCGAGTTGGCCAAGAAATTCTATCCACAGGGTGTTTCAGTCTTGCCGACG
    ACAGCGGGGACAGGACCTATGCATACGGTCTTTGATGCCCTAGAGGTACCAATGGTTGCA
    TTCGGTCTAGGAAATGCCAATAGCCGAGACCACGGTGGAGATGAAAATGTGCGAATCGCT
    GATTATTACACCCATATCGAATTAGTAGAGGAGCTGATTAGAAGCTATGAGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1374

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: HMPREF1038_00224 [new locus tag: HMPREF1038_RS01095 ]
  • symbol: HMPREF1038_00224
  • description: peptidase, M20/M25/M40 family
  • length: 457
  • theoretical pI: 4.62243
  • theoretical MW: 51480.8
  • GRAVY: -0.334136

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides peptidase, ArgE/DapE family (TIGR01910; EC 3.4.-.-; HMM-score: 105.1)
    Metabolism Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01246; EC 3.5.1.18; HMM-score: 89.2)
    and 8 more
    Metabolism Amino acid biosynthesis Glutamate family acetylornithine deacetylase (ArgE) (TIGR01892; EC 3.5.1.16; HMM-score: 74.4)
    putative dipeptidase (TIGR01887; EC 3.4.13.-; HMM-score: 52.9)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides dipeptidase PepV (TIGR01886; EC 3.4.13.-; HMM-score: 47.6)
    N-acetyl-ornithine/N-acetyl-lysine deacetylase (TIGR01902; HMM-score: 43.9)
    Metabolism Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01900; EC 3.5.1.18; HMM-score: 41.7)
    N-acyl-L-amino-acid amidohydrolase (TIGR01880; EC 3.5.1.14; HMM-score: 37.4)
    putative selenium metabolism hydrolase (TIGR03526; HMM-score: 22.8)
    hydrolase, peptidase M42 family (TIGR03106; HMM-score: 12.5)
  • TheSEED  :
    • Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A
  • ⊞PFAM:
    Peptidase_MH (CL0035) Peptidase_M20; Peptidase family M20/M25/M40 (PF01546; HMM-score: 112.1)
    and 3 more
    no clan defined M20_dimer; Peptidase dimerisation domain (PF07687; HMM-score: 76)
    Peptidase_MH (CL0035) Peptidase_M28; Peptidase family M28 (PF04389; HMM-score: 15.6)
    no clan defined BMC; BMC domain (PF00936; HMM-score: 12.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002849
    • TAT(Tat/SPI): 0.001149
    • LIPO(Sec/SPII): 0.000267
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: AFS42302 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MFFPSEQEQIEKFEKDHVAQHYFEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVGAEVEIDESYTAPFVMAHFKSSRPDAKTLIFYNHYDTVPADGDQVWTEDPFTLSVRNGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNISFIMEGAEESASTDLDKYLEKHADKLCGADLLVWEQGTKNALEQLEISGGNKGIVTFDAKVKSADVDIHSSYGGVVESAPWYLLQALQSLRAADGRILVEGLYEEVQEPNEREMALLETYGQRNPEEVSRIYGLELPLLQEERMAFLKRFFFEPALNIEGIQSGYQGQGVKTILPAEASAKLEVRLVPGLEPHDVLEKIRKQLDKNGFDKVELYYTLGEMSYRSDMSAPAILNVIELAKKFYPQGVSVLPTTAGTGPMHTVFDALEVPMVAFGLGNANSRDHGGDENVRIADYYTHIELVEELIRSYE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • data available for TIGR4

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V: SPV_0152 PneumoExpress

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=HMPREF1038_00224&oldid=77524"
  • This page was last edited on 20 January 2022, at 16:02.
  • Privacy and Cookies
  • About PneumoWiki
  • Imprint
We use Matomo for user statistics and cookies. Privacy and Cookies X
CancelTry again