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TIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae CGSP14
  • locus tag: SPCG_1710
  • pan locus tag?:
  • symbol: SPCG_1710
  • pan gene symbol?: —
  • synonym:
  • product: primosome assembly protein PriA

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPCG_1710
  • symbol: SPCG_1710
  • product: primosome assembly protein PriA
  • replicon: chromosome
  • strand: -
  • coordinates: 1683370..1684797
  • length: 1428
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP001033 (1683370..1684797) NCBI
  • BioCyc:
  • MicrobesOnline: 5761045 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGGCCCTAGCTAAGATTATCGTAGATGTGCCCTTGATGCAGACGGACCAGCCCTATAGT
    TACAGGATTCCGGAGGAATTTGAGGGAATGCTGGAAGTTGGGATGCGGGTTCATGTGCCT
    TTTGGTAAGGGTAATCGCCTGATTCAAGGGATTGTTCTTGGTTTGAAGTCCCAATCAGAT
    GGAGAAGAGATGGAGCAAGATTTAAAAGATATTGCAGAGGTGCTGGATTTTTCTCCTGTT
    CTCACGCCAGAACAACTCTGGCTGGCTGAGGAGTTACGCAAATCTGTCTTCTCCTACAAA
    ATCTCTATCCTCAAGGCCATGCTTCCAGGGTTTCTGAATTCTAGCTATGACAAGATTCTC
    TATCCTCTGGAAGGCTTGAGTCAGGAAGAACGAGTGCGCCTGTTTGGTTCAGAAGATTCG
    CTAGCCTTTTCTTCACTAGACCTTGCCAAGCAAGCTGAAATGATGCGTTTGACTAGAAAA
    GGCCTGCTTGGTCTGGAATATCAGGCAGTCGATCAAAAGAAGGTCAAGACCCAGTCTTGG
    TATGAGGTTGACCATGCCCAATTAGAAGGTGTTGAGATTTCTACACGTGCCAAGAAAAAG
    TTGGAACTGAGAGATTATCTGCTGTCTCATCCAGAGAGCGCTTCCTTGGCTAGCTTGTTA
    GAGTCCTACTCGCGAGAGCAAGTCAACTTCTTTGTGGATCAAGGTGCTGTTACCATAGTC
    CAAAAGGAAGTTCAACGCTCGGCTGCTTATTTTGAAGGAATTGAAGCAAGTAGACCTTTG
    GAGTTAAATCCAGAACAAAGACAGGCGCGTGATGCGGTTGTGAGTTCTATTGGCAGTTCT
    CAACCTCCCTTTCTACTTCAAGGGATTACAGGAAGTGGGAAGACCGAGGTTTACTTGCAG
    ATTATCCAAGGTGCCCTGGATAAGGGCAAGACAGCTATTTTGCTGGTACCTGAGATTTCC
    TTGACTCCTCAGATGACCGAGCGTTTTATAGCACGTTTTGGGGACAAGGTAGCCATTCTT
    CACTCAGGATTATCCAATGGTGAAAAGTATGATGAATGGCGCAAGGTGGAGCGTGGCGAT
    GCCCAAGTTGTTGTTGGTGCCAGATCTGCTATCTTTGCTCCTCTGAAAAATCTGGGTGTC
    ATGATTATTGATGAAGAGCATGAAGCGGCTTATAAGCAGGACAGCAATCCCCGTTACCAT
    GCCAGAGAGGTAGCTATTTTACGGGCTCAGTATAATCAAGCAACTCTGGTACTTGGATCT
    GCAACGCCGAGCTTAGAGAGCCGGGCACGTGCTGGCAAAGGCGTCTATCAACACTTACGT
    CTAACCCAACGTGCCAATCATTTGGCTACAATCCCTGAGGTTCAAGTGATTGACTTTCGA
    GATATATCGGACAAAATGAGACGTCAAACTTTACGCCTCCTTTGCTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1428

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPCG_1710
  • symbol: SPCG_1710
  • description: primosome assembly protein PriA
  • length: 475
  • theoretical pI: 6.15256
  • theoretical MW: 53340.7
  • GRAVY: -0.267789

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair primosomal protein N' (TIGR00595; EC 3.6.1.-; HMM-score: 254.8)
    and 5 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair ATP-dependent DNA helicase RecG (TIGR00643; EC 3.6.4.12; HMM-score: 50)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair transcription-repair coupling factor (TIGR00580; EC 3.6.1.-; HMM-score: 46.6)
    CRISPR-associated helicase Cas3 (TIGR01587; HMM-score: 15.4)
    CRISPR-associated helicase Cas3, subtype CYANO (TIGR03158; HMM-score: 13.4)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair excinuclease ABC subunit B (TIGR00631; EC 3.1.25.-; HMM-score: 11.2)
  • TheSEED  :
    • Helicase PriA essential for oriC/DnaA-independent DNA replication
    DNA Metabolism DNA replication DNA-replication  Helicase PriA essential for oriC/DnaA-independent DNA replication
  • ⊞PFAM:
    no clan defined PriA_3primeBD; 3'DNA-binding domain (3'BD) (PF17764; HMM-score: 77.5)
    P-loop_NTPase (CL0023) ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 67.6)
    and 5 more
    DEAD; DEAD/DEAH box helicase (PF00270; HMM-score: 51.6)
    AAA_30; AAA domain (PF13604; HMM-score: 16)
    TrwB_AAD_bind; Type IV secretion-system coupling protein DNA-binding domain (PF10412; HMM-score: 14)
    DUF2075; Schlafen group 3, DNA/RNA helicase domain (PF09848; HMM-score: 13.6)
    PIF1; PIF1-like helicase (PF05970; HMM-score: 10.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001201
    • TAT(Tat/SPI): 0.000114
    • LIPO(Sec/SPII): 0.000168
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACB90962 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MALAKIIVDVPLMQTDQPYSYRIPEEFEGMLEVGMRVHVPFGKGNRLIQGIVLGLKSQSDGEEMEQDLKDIAEVLDFSPVLTPEQLWLAEELRKSVFSYKISILKAMLPGFLNSSYDKILYPLEGLSQEERVRLFGSEDSLAFSSLDLAKQAEMMRLTRKGLLGLEYQAVDQKKVKTQSWYEVDHAQLEGVEISTRAKKKLELRDYLLSHPESASLASLLESYSREQVNFFVDQGAVTIVQKEVQRSAAYFEGIEASRPLELNPEQRQARDAVVSSIGSSQPPFLLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDKVAILHSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLKNLGVMIIDEEHEAAYKQDSNPRYHAREVAILRAQYNQATLVLGSATPSLESRARAGKGVYQHLRLTQRANHLATIPEVQVIDFRDISDKMRRQTLRLLC

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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