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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 08-SEP-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae D39V
- locus tag: SPV_RS05345 [old locus tag: SPV_0927 ]
- pan locus tag?: PNEUPAN002154000
- symbol: SPV_RS05345
- pan gene symbol?: nplT
- synonym:
- product: glycoside hydrolase family 13 protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPV_RS05345 [old locus tag: SPV_0927 ]
- symbol: SPV_RS05345
- product: glycoside hydrolase family 13 protein
- replicon: chromosome
- strand: -
- coordinates: 1023381..1025120
- length: 1740
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_CP027540 (1023381..1025120) NCBI
- BioCyc: see SPV_0927
- MicrobesOnline:
- PneumoBrowse: SPV_0927 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1681ATGGAATTGAGTGCTATTTACCATGGGCCTGAGTCGGAGTATGCCTATCTTTATAAGGAT
AAGAAACTCCATATTCGAATTCGAACTAAGAAAGGGGACATTGAAAGCATCAACTTGCAC
TATGGGGACCCTTTTATCTTTATGGAGGAGTTTTATCAGGATACAAAAGAAATGGTCAAG
ATAACTTCTGGTACCTTATTTGACCATTGGCAGGTTGAAGTGTCAGTTGACTTTGCACGT
ATCCAGTATCTCTTTGAGCTCAGAGATACAGAAGGTCAAAATATTTTGTATGGCGATAAA
GGGTGTGTGGAAAATTCTCTAGAAAATCTTCATGCAATTGGGAATGGATTTAAGTTGCCT
TATCTTCATGAGATTGATGCCTGCAAGGTTCCTGACTGGGTTTCAAATACGGTATGGTAT
CAGATATTTCCTGAAAGATTTGCCAATGGCAATGCTCTATTAAACCCAGAAGGGACTTTA
GACTGGGATTCATCTGTCACACCTAAGAGCGATGATTTCTTTGGTGGTGATTTACAGGGG
ATTATTGATCATATGGATTACTTGCAAGACTTGGGTATTACTGGACTATATCTTTGTCCC
ATCTTTGAATCTACAAGCAATCACAAGTACAATACGACAGATTACTTTGAAATTGACCGT
CATTTTGGAGACAAGGAGACCTTTCGGGAACTGGTGGATCAAGCGCATCATCGTGGCATG
AAAGTCATGCTGGATGCGGTATTTAATCATATTGCTTCGCAATCTCTTCAATGGAAAAAT
GTCGTCAAAAATGGTGAACAGTCTGCTTATAAGGATTGGTTCCATATTCAACAATTCCCA
GTGACAACTGAAAAGCTAGTTAATAAGAGAGACTTACCCTATCATGTTTTTGGTTTCGAG
GACTATATGCCTAAGCTAAATACAGCCAATCCAGAGGTCAAGAATTATCTTTTAAAGGTT
GCGACTTATTGGATTGAAGAGTTTAATATCGATGCTTGGCGTTTGGATGTGGCTAATGAG
ATTGACCATCAGTTCTGGAAGGATTTTCGTAAGGCAGTTTTAGCTAAAAATCCTGATCTT
TATATCCTAGGAGAAGTCTGGCATACATCTCAGCCTTGGCTAAATGGAGATGAGTTCCAT
GCCGTCATGAATTATCCTTTATCTGATAGTATCAAGGACTATTTCTTACGAGGAATTAAG
AAGACAGACCAGTTCATCGATGAAATCAATGGAGAGTCTATGTATTACAAGCAGCAGATT
TCAGAGGTCATGTTTAATCTCTTGGATTCACATGATACAGAGCGAATCCTGTGGACGGCC
AATGAAGATGTTCAACTGGTTAAATCAGCCTTAGCCTTTCTCTTTTTACAAAAAGGAACA
CCGTGCATTTATTACGTAACCGAGCTAGCCTTGACTGGAGGACCAGATCCAGATTGTCGT
CGTTGTATGCCTTGGGAACGTGTATCAAGTGACAATGATATGCTGAACTTTATGAAGAGG
CTGATTAAGATTCGGAAATACGCGTCAGTAATCATTTCGCATGGCAAGTATAGCCTTCAA
GAAATCAACTCTGATCTAGTAGCTCTGGAATGGAAATACGAAGGACGGATCCTCAAAGCA
ATATTCAACCAATCAACAGAAGATTATCTTTTAGAGAAAGAAGCAGTAGCACTAGCAAGC
AATTGCCAAGAATTGGATAATCAGCTTGTCATCTCTCCAGATGGATTTATGATTTTCTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPV_RS05345 [old locus tag: SPV_0927 ]
- symbol: SPV_RS05345
- description: glycoside hydrolase family 13 protein
- length: 579
- theoretical pI: 4.75861
- theoretical MW: 67618
- GRAVY: -0.404318
⊟Function[edit | edit source]
- reaction: EC 3.2.1.-? ExPASy
- ⊞TIGRFAM: alpha,alpha-phosphotrehalase (TIGR02403; EC 3.2.1.93; HMM-score: 112.5)Energy metabolism Biosynthesis and degradation of polysaccharides trehalose synthase (TIGR02456; EC 5.4.99.16; HMM-score: 91.3)and 8 more
- TheSEED: data available for D39, Hungary19A-6
- ⊞PFAM: Glyco_hydro_tim (CL0058) Alpha-amylase; Alpha amylase, catalytic domain (PF00128; HMM-score: 242.7)and 3 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000423451 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MELSAIYHGPESEYAYLYKDKKLHIRIRTKKGDIESINLHYGDPFIFMEEFYQDTKEMVKITSGTLFDHWQVEVSVDFARIQYLFELRDTEGQNILYGDKGCVENSLENLHAIGNGFKLPYLHEIDACKVPDWVSNTVWYQIFPERFANGNALLNPEGTLDWDSSVTPKSDDFFGGDLQGIIDHMDYLQDLGITGLYLCPIFESTSNHKYNTTDYFEIDRHFGDKETFRELVDQAHHRGMKVMLDAVFNHIASQSLQWKNVVKNGEQSAYKDWFHIQQFPVTTEKLVNKRDLPYHVFGFEDYMPKLNTANPEVKNYLLKVATYWIEEFNIDAWRLDVANEIDHQFWKDFRKAVLAKNPDLYILGEVWHTSQPWLNGDEFHAVMNYPLSDSIKDYFLRGIKKTDQFIDEINGESMYYKQQISEVMFNLLDSHDTERILWTANEDVQLVKSALAFLFLQKGTPCIYYVTELALTGGPDPDCRRCMPWERVSSDNDMLNFMKRLIKIRKYASVIISHGKYSLQEINSDLVALEWKYEGRILKAIFNQSTEDYLLEKEAVALASNCQELDNQLVISPDGFMIF
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress: SPV_0927 PneumoExpress