Navigation

  • Main page
  • Downloads
  • Strains
  • Getting Started
  • Recent changes
  • Random page
  • What links here
  • Related changes
  • Special pages
  • Printable version
  • Permanent link
  • Page information

personal-loginout

  • Log in
  • Not logged in
  • Talk
  • Contributions
  • Create account

Search

?

Navigation menu

Namespaces
  • Page
  • Discussion
English
From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 02-MAY-2018

Views
  • Read
  • Edit
  • History
  • Edit source

⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Expression data
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Streptococcus pneumoniae D39
  • locus tag: SPD_0090 [new locus tag: SPD_RS00485 ]
  • pan locus tag?: PNEUPAN000724000
  • symbol: SPD_0090
  • pan gene symbol?: ABC-SBP_1
  • synonym:
  • product: ABC transporter, substrate-binding protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPD_0090 [new locus tag: SPD_RS00485 ]
  • symbol: SPD_0090
  • product: ABC transporter, substrate-binding protein
  • replicon: chromosome
  • strand: +
  • coordinates: 89931..91406
  • length: 1476
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP000410 (89931..91406) NCBI
  • BioCyc: see SPD_RS00485
  • MicrobesOnline: 2017041 MicrobesOnline
  • PneumoBrowse for strain D39V: SPV_0090 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    ATGAAAAACTGGAAAAAATATGCTTTTGCATCTGCTAGTGTAGTCGCTCTGGCTGCAGGT
    CTTGCTGCTTGTGGAAATTTGACAGGTAACAGCAAAAAAGCTGCTGATTCAGGTGACAAA
    CCTGTTATCAAAATGTACCAAATCGGTGACAAACCAGACAACTTGGATGAATTGTTAGCA
    AATGCCAACAAAATCATCGAAGAAAAAGTTGGTGCCAAATTGGATATCCAATACCTTGGC
    TGGGGTGACTATGGTAAGAAAATGTCAGTTATCACATCATCTGGTGAAAACTATGATATT
    GCCTTTGCAGATAACTATATTGTAAATGCTCAAAAAGGTGCTTACGCTGACTTGACAGAA
    TTGTACAAAAAAGAAGGTAAAGACCTTTACAAAGCACTTGACCCAGCTTACATCAAGGGT
    AATACTGTAAATGGTAAGATTTACGCTGTTCCAGTTGCAGCCAACGTTGCATCATCTCAA
    AACTTTGCCTTCAACGGAACTCTCCTTGCTAAATATGGTATCGATATTTCAGGTGTTACT
    TCTTACGAAACTCTTGAGCCAGTCTTGAAACAAATCAAAGAAAAAGCTCCAGACGTAGTA
    CCATTTGCTATTGGTAAAGTTTTCATCCCATCTGATAACTTTGACTACCCAGTAGCAAAC
    GGTCTTCCATTCGTTATCGACCTTGAAGGCGATACTACTAAAGTTGTAAACCGTTACGAA
    GTGCCTCGTTTCAAAGAACACTTGAAGACTCTTCACAAATTCTATGAAGCTGGCTACATT
    CCAAAAGACGTCGCAACAAGCGATACTTCCTTTGACCTTCAACAAGATACTTGGTTCGTT
    CGTGAAGAAACAGTAGGACCAGCTGACTACGGTAACAGCTTGCTTTCACGTGTTGCCAAC
    AAAGATATCCAAATCAAACCAATTACTAACTTCATCAAGAAAAACCAAACAACACAAGTT
    GCTAACTTTGTCATCTCAAACAACTCTAAGAACAAAGAAAAATCAATGGAAATCTTGAAC
    CTCTTGAATACGAATCCAGAACTCTTGAACGGTCTTGTTTACGGTCCAGAAGGCAAGAAC
    TGGGAAAAAATTGAAGGTAAAGAAAACCGTGTTCGCGTTCTTGATGGCTACAAAGGAAAC
    ACTCACATGGGTGGATGGAACACTGGTAACAACTGGATCCTTTACATCAACGAAAACGTT
    ACAGACCAACAAATCGAAAATTCTAAGAAAGAATTGGCAGAAGCTAAAGAATCTCCAGCG
    CTTGGATTTATCTTCAATACTGACAATGTGAAATCTGAAATCTCAGCTATTGCTAACACA
    ATGCAACAATTTGATACAGCTATCAACACTGGTACTGTAGACCCAGATAAAGCGATTCCA
    GAATTGATGGAAAAATTGAAATCTGAAGGTGCCTACGAAAAAGTATTGAACGAAATGCAA
    AAACAATACGATGAATTCTTGAAAAACAAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1476

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPD_0090 [new locus tag: SPD_RS00485 ]
  • symbol: SPD_0090
  • description: ABC transporter, substrate-binding protein
  • length: 491
  • theoretical pI: 5.30604
  • theoretical MW: 54485.2
  • GRAVY: -0.470468

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)
    Carbohydrates Di- and oligosaccharides Fructooligosaccharides(FOS) and Raffinose Utilization  Multiple sugar ABC transporter, substrate-binding protein
  • ⊞PFAM:
    no clan defined DUF3502; Domain of unknown function (DUF3502) (PF12010; HMM-score: 118)
    and 2 more
    Mak16; Mak16 protein C-terminal region (PF04874; HMM-score: 12)
    LppaM (CL0421) LPAM_2; Prokaryotic lipoprotein-attachment site (PF13627; HMM-score: 9.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.63
    • Cell wall & surface Score: 0.0053
    • Extracellular Score: 0.3647
  • ⊞SignalP: Signal peptide LIPO(Sec/SPII) length 23 aa
    • SP(Sec/SPI): 0.00546
    • TAT(Tat/SPI): 0.000164
    • LIPO(Sec/SPII): 0.994125
    • Cleavage Site: CS pos: 23-24. LAA-CG. Pr: 0.9945
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ABJ55224 NCBI
  • UniProt: A0A0H2ZQK8 UniProt

⊟Protein sequence[edit | edit source]

  • MKNWKKYAFASASVVALAAGLAACGNLTGNSKKAADSGDKPVIKMYQIGDKPDNLDELLANANKIIEEKVGAKLDIQYLGWGDYGKKMSVITSSGENYDIAFADNYIVNAQKGAYADLTELYKKEGKDLYKALDPAYIKGNTVNGKIYAVPVAANVASSQNFAFNGTLLAKYGIDISGVTSYETLEPVLKQIKEKAPDVVPFAIGKVFIPSDNFDYPVANGLPFVIDLEGDTTKVVNRYEVPRFKEHLKTLHKFYEAGYIPKDVATSDTSFDLQQDTWFVREETVGPADYGNSLLSRVANKDIQIKPITNFIKKNQTTQVANFVISNNSKNKEKSMEILNLLNTNPELLNGLVYGPEGKNWEKIEGKENRVRVLDGYKGNTHMGGWNTGNNWILYINENVTDQQIENSKKELAEAKESPALGFIFNTDNVKSEISAIANTMQQFDTAINTGTVDPDKAIPELMEKLKSEGAYEKVLNEMQKQYDEFLKNKK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

  • MicrobesOnline: SPD_0088 > SPD_0089 > SPD_0090

⊟Regulation[edit | edit source]

  • ⊞regulator: CcpA regulon
    CcpA(TF)important in Global catabolite repression; RegPrecise    transcription unit transferred from TIGR4 data RegPrecise 

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V: SPV_0090 PneumoExpress

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPD_0090&oldid=6674"
  • This page was last edited on 20 January 2022, at 13:19.
  • Privacy and Cookies
  • About PneumoWiki
  • Imprint
We use Matomo for user statistics and cookies. Privacy and Cookies X
CancelTry again