UndoCtrl+ZRedoCtrl+Shift+Z, Ctrl+Y
LinkCtrl+K

Links

Link important words to other wiki articles or even other websites. It will help readers understand the context.

Okay, got it
Special character
Edit notices
Save changes…Alt+S
ParagraphCtrl+0HeadingCtrl+2Sub-heading 1Ctrl+3Sub-heading 2Ctrl+4Sub-heading 3Ctrl+5Sub-heading 4Ctrl+6Header cellContent cellPreformattedCtrl+7Block quoteCtrl+8Page titleCtrl+1
BoldCtrl+BItalicCtrl+ISuperscriptCtrl+.SubscriptCtrl+,Computer codeCtrl+Shift+6StrikethroughCtrl+Shift+5UnderlineCtrl+UBigSmallLanguageRemoveCtrl+\, Ctrl+MMore
PubMedBasicCtrl+Shift+KRe-useMore
Bullet listNumbered listDecrease indentationShift+Tab, Ctrl+[Increase indentationTab, Ctrl+]More
Images and mediaTemplateTableCommentGalleryYour signatureReferences listMore
Read the user guideKeyboard shortcutsCtrl+/, Ctrl+Shift+/Toolbar searchCtrl+Shift+P, Ctrl+Alt+Shift+P
More
2 noticesClose
Warning: You are not logged in. Your IP address will be publicly visible if you make any edits. If you log in or create an account, your edits will be attributed to your username, along with other benefits.

You are using a browser which is not officially supported by this editor.

OptionsCategoriesPage settingsAdvanced settingsLanguagesTemplates used⧼visualeditor-changedir-rtl⧽Ctrl+Shift+XFind and replaceCtrl+FMore
Visual editingSource editingMore
From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae TIGR4
  • locus tag: SP_1607 [new locus tag: SP_RS07925 ]
  • pan locus tag?: PNEUPAN003010000
  • symbol: galE-1
  • pan gene symbol?: galE-1
  • synonym: galE
  • product: UDP-glucose 4-epimerase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP_1607 [new locus tag: SP_RS07925 ]
  • symbol: galE-1
  • product: UDP-glucose 4-epimerase
  • replicon: chromosome
  • strand: -
  • coordinates: 1508427..1509446
  • length: 1020
  • essential: yes [1] other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGCAAGAAAAGATTTTGGTAACTGGTGGTGCCGGTTTTATTGGAACCCACACTGTTATT
    GAATTGATCCAAGCAGGTCATCAAGTTGTTGTGGTGGATAATCTTGTCAATAGCAATCGT
    AAGAGTTTAGAAGTTGTTGAAGGAATCACAGGAGTTGAGATTCCTTTCTATGAGGCAGAT
    ATTCGTGACACAGATACCCTCAGAGATATTTTCAAGCAGGAAGAACCGACTGGTGTCATT
    CACTTTGCTGGTTTGAAGGCTGTTGGCGAATCAACACGTATCCCTCTTGCCTACTATGAC
    AACAATATCGCTGGAACTGTCAGCCTTTTGAAAGCCATGGAAGAAAACAACTGTAAAAAC
    ATCATCTTCAGTTCTTCTGCGACAGTTTACGGGGATCCGCACACAGTGCCCATCTTGGAA
    GATTTCCCACTTTCAGTGACCAACCCATACGGTCGTACTAAGCTCATGCTAGAGGAAATT
    TTGACTGATATTTACAAAGCAGACTCAGAATGGAATGTTGTCTTGCTTCGTTACTTTAAC
    CCAATCGGAGCCCATGAGAGTGGTGATTTGGGAGAAAATCCAAACGGTATTCCAAACAAT
    CTCTTGCCATATGTGACTCAAGTAGCCGTTGGAAAATTAGAGCAAGTGCAAGTGTTTGGA
    GACGATTACGATACGGAAGATGGAACAGGTGTTCGTGACTATATCCACGTTGTCGATTTG
    GCTAAGGGTCACGTTGCAGCTTTGAAAAAAATCCAAAAAGGTTCAGGACTAAACGTTTAT
    AACCTTGGAACTGGTAAAGGTTACTCAGTTCTTGAAATTATCCAAAACATGGAAAAAGCG
    GTGGGCCGTCCTATTCCTTACCGCATCGTAGAACGTCGCCCAGGTGATATCGCTGCCTGC
    TACTCAGACCCGGCAAAAGCTAAAGCAGAACTCGGTTGGGAAGCAGAACTCGACATCACC
    CAAATGTGTGAAGACGCATGGCGTTGGCAAAGCAAGCATCCAAATGGATTTGAAGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP_1607 [new locus tag: SP_RS07925 ]
  • symbol: GalE-1
  • description: UDP-glucose 4-epimerase
  • length: 339
  • theoretical pI: 4.55533
  • theoretical MW: 37379
  • GRAVY: -0.227729

⊟Function[edit | edit source]

  • ⊞⊞reaction:
    EC 5.1.3.2?  ExPASy
    UDP-glucose 4-epimerase UDP-alpha-D-glucose = UDP-alpha-D-galactose
  • ⊞⊞TIGRFAM:
    Metabolism Energy metabolism Sugars UDP-glucose 4-epimerase GalE (TIGR01179; EC 5.1.3.2; HMM-score: 467.6)
    and 22 more
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides dTDP-glucose 4,6-dehydratase (TIGR01181; EC 4.2.1.46; HMM-score: 121.3)
    NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family (TIGR04180; HMM-score: 109.9)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides ADP-glyceromanno-heptose 6-epimerase (TIGR02197; EC 5.1.3.20; HMM-score: 108.4)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides CDP-glucose 4,6-dehydratase (TIGR02622; EC 4.2.1.45; HMM-score: 69.6)
    hopanoid-associated sugar epimerase (TIGR03466; HMM-score: 67.6)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides GDP-mannose 4,6-dehydratase (TIGR01472; EC 4.2.1.47; HMM-score: 35.8)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides dTDP-4-dehydrorhamnose reductase (TIGR01214; EC 1.1.1.133; HMM-score: 34)
    UDP-N-acetylglucosamine 4,6-dehydratase (inverting) (TIGR03589; EC 4.2.1.115; HMM-score: 32)
    Hypothetical proteins Conserved TIGR01777 family protein (TIGR01777; HMM-score: 29.6)
    thioester reductase domain (TIGR01746; HMM-score: 27.7)
    2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (TIGR04316; EC 1.3.1.28; HMM-score: 21.9)
    acetoacetyl-CoA reductase (TIGR01829; EC 1.1.1.36; HMM-score: 21)
    3-hydroxybutyrate dehydrogenase (TIGR01963; HMM-score: 18.2)
    Metabolism Fatty acid and phospholipid metabolism Biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase (TIGR01830; EC 1.1.1.100; HMM-score: 17.8)
    Metabolism Energy metabolism Fermentation acetoin reductases (TIGR02415; EC 1.1.1.-; HMM-score: 17.3)
    UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase (TIGR04130; EC 4.2.1.-,5.1.3.-; HMM-score: 16.7)
    Unknown function Enzymes of unknown specificity SDR family mycofactocin-dependent oxidoreductase (TIGR04504; EC 1.1.99.-; HMM-score: 16.7)
    rhamnulose-1-phosphate aldolase/alcohol dehydrogenase (TIGR02632; EC 1.1.1.1,4.1.2.19; HMM-score: 16.1)
    nucleotide sugar dehydrogenase (TIGR03026; HMM-score: 14.3)
    polyketide-type polyunsaturated fatty acid synthase PfaA (TIGR02813; HMM-score: 13.6)
    2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (TIGR03206; EC 1.1.1.-; HMM-score: 13.3)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Thiamine glycine oxidase ThiO (TIGR02352; EC 1.4.3.19; HMM-score: 10.8)
  • ⊞⊞TheSEED  :
    • UDP-glucose 4-epimerase (EC 5.1.3.2)
    Carbohydrates Di- and oligosaccharides Lactose and Galactose Uptake and Utilization  UDP-glucose 4-epimerase (EC 5.1.3.2)
    and 1 more
    Protein Metabolism Protein processing and modification N-linked Glycosylation in Bacteria  UDP-glucose 4-epimerase (EC 5.1.3.2)
  • ⊞⊞PFAM:
    NADP_Rossmann (CL0063) GDP_Man_Dehyd; GDP-mannose 4,6 dehydratase (PF16363; HMM-score: 210.8)
    Epimerase; NAD dependent epimerase/dehydratase family (PF01370; HMM-score: 193.9)
    and 12 more
    3Beta_HSD; 3-beta hydroxysteroid dehydrogenase/isomerase family (PF01073; HMM-score: 63.1)
    Polysacc_synt_2; Polysaccharide biosynthesis protein (PF02719; HMM-score: 52.2)
    RmlD_sub_bind; RmlD substrate binding domain (PF04321; HMM-score: 42.7)
    KR; KR domain (PF08659; HMM-score: 33.4)
    NAD_binding_10; NAD(P)H-binding (PF13460; HMM-score: 30.5)
    adh_short; short chain dehydrogenase (PF00106; HMM-score: 28.7)
    NmrA; NmrA-like family (PF05368; HMM-score: 23)
    NAD_binding_4; Male sterility protein (PF07993; HMM-score: 21.1)
    UDPG_MGDP_dh_N; UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain (PF03721; HMM-score: 16)
    adh_short_C2; Enoyl-(Acyl carrier protein) reductase (PF13561; HMM-score: 15)
    TrkA_N; TrkA-N domain (PF02254; HMM-score: 13.5)
    GT-B (CL0113) Glyco_transf_4; Glycosyltransferase Family 4 (PF13439; HMM-score: 12)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9562
    • Cytoplasmic Membrane Score: 0.0168
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.0267
  • ⊞⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.028275
    • TAT(Tat/SPI): 0.001278
    • LIPO(Sec/SPII): 0.001839
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQEKILVTGGAGFIGTHTVIELIQAGHQVVVVDNLVNSNRKSLEVVEGITGVEIPFYEADIRDTDTLRDIFKQEEPTGVIHFAGLKAVGESTRIPLAYYDNNIAGTVSLLKAMEENNCKNIIFSSSATVYGDPHTVPILEDFPLSVTNPYGRTKLMLEEILTDIYKADSEWNVVLLRYFNPIGAHESGDLGENPNGIPNNLLPYVTQVAVGKLEQVQVFGDDYDTEDGTGVRDYIHVVDLAKGHVAALKKIQKGSGLNVYNLGTGKGYSVLEIIQNMEKAVGRPIPYRIVERRPGDIAACYSDPAKAKAELGWEAELDITQMCEDAWRWQSKHPNGFED

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Tim van Opijnen, Andrew Camilli
    A fine scale phenotype-genotype virulence map of a bacterial pathogen.
    Genome Res: 2012, 22(12);2541-51
    [PubMed:22826510] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SP_1607&oldid=3829"
Insert paragraph

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae TIGR4
  • locus tag: SP_1607 [new locus tag: SP_RS07925 ]
  • pan locus tag?: PNEUPAN003010000
  • symbol: galE-1
  • pan gene symbol?: galE-1
  • synonym: galE
  • product: UDP-glucose 4-epimerase

Insert paragraph

⊟Genome View[edit | edit source]

Insert paragraph

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP_1607 [new locus tag: SP_RS07925 ]
  • symbol: galE-1
  • product: UDP-glucose 4-epimerase
  • replicon: chromosome
  • strand: -
  • coordinates: 1508427..1509446
  • length: 1020
  • essential: yes [1] other strains

  1. ↑ Tim van Opijnen, Andrew Camilli
    A fine scale phenotype-genotype virulence map of a bacterial pathogen.
    Genome Res: 2012, 22(12);2541-51
    [PubMed:22826510] [WorldCat.org] [DOI] (I p)
Insert paragraph

⊟Accession numbers[edit | edit source]

Insert paragraph

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGCAAGAAAAGATTTTGGTAACTGGTGGTGCCGGTTTTATTGGAACCCACACTGTTATT
    GAATTGATCCAAGCAGGTCATCAAGTTGTTGTGGTGGATAATCTTGTCAATAGCAATCGT
    AAGAGTTTAGAAGTTGTTGAAGGAATCACAGGAGTTGAGATTCCTTTCTATGAGGCAGAT
    ATTCGTGACACAGATACCCTCAGAGATATTTTCAAGCAGGAAGAACCGACTGGTGTCATT
    CACTTTGCTGGTTTGAAGGCTGTTGGCGAATCAACACGTATCCCTCTTGCCTACTATGAC
    AACAATATCGCTGGAACTGTCAGCCTTTTGAAAGCCATGGAAGAAAACAACTGTAAAAAC
    ATCATCTTCAGTTCTTCTGCGACAGTTTACGGGGATCCGCACACAGTGCCCATCTTGGAA
    GATTTCCCACTTTCAGTGACCAACCCATACGGTCGTACTAAGCTCATGCTAGAGGAAATT
    TTGACTGATATTTACAAAGCAGACTCAGAATGGAATGTTGTCTTGCTTCGTTACTTTAAC
    CCAATCGGAGCCCATGAGAGTGGTGATTTGGGAGAAAATCCAAACGGTATTCCAAACAAT
    CTCTTGCCATATGTGACTCAAGTAGCCGTTGGAAAATTAGAGCAAGTGCAAGTGTTTGGA
    GACGATTACGATACGGAAGATGGAACAGGTGTTCGTGACTATATCCACGTTGTCGATTTG
    GCTAAGGGTCACGTTGCAGCTTTGAAAAAAATCCAAAAAGGTTCAGGACTAAACGTTTAT
    AACCTTGGAACTGGTAAAGGTTACTCAGTTCTTGAAATTATCCAAAACATGGAAAAAGCG
    GTGGGCCGTCCTATTCCTTACCGCATCGTAGAACGTCGCCCAGGTGATATCGCTGCCTGC
    TACTCAGACCCGGCAAAAGCTAAAGCAGAACTCGGTTGGGAAGCAGAACTCGACATCACC
    CAAATGTGTGAAGACGCATGGCGTTGGCAAAGCAAGCATCCAAATGGATTTGAAGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020

Insert paragraph

This data comes from external databases and cannot be edited.

Insert paragraph

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP_1607 [new locus tag: SP_RS07925 ]
  • symbol: GalE-1
  • description: UDP-glucose 4-epimerase
  • length: 339
  • theoretical pI: 4.55533
  • theoretical MW: 37379
  • GRAVY: -0.227729

Insert paragraph

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 5.1.3.2?  ExPASy
    UDP-glucose 4-epimerase UDP-alpha-D-glucose = UDP-alpha-D-galactose
  • ⊞TIGRFAM:
    Metabolism Energy metabolism Sugars UDP-glucose 4-epimerase GalE (TIGR01179; EC 5.1.3.2; HMM-score: 467.6)
    and 22 more
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides dTDP-glucose 4,6-dehydratase (TIGR01181; EC 4.2.1.46; HMM-score: 121.3)
    NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family (TIGR04180; HMM-score: 109.9)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides ADP-glyceromanno-heptose 6-epimerase (TIGR02197; EC 5.1.3.20; HMM-score: 108.4)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides CDP-glucose 4,6-dehydratase (TIGR02622; EC 4.2.1.45; HMM-score: 69.6)
    hopanoid-associated sugar epimerase (TIGR03466; HMM-score: 67.6)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides GDP-mannose 4,6-dehydratase (TIGR01472; EC 4.2.1.47; HMM-score: 35.8)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides dTDP-4-dehydrorhamnose reductase (TIGR01214; EC 1.1.1.133; HMM-score: 34)
    UDP-N-acetylglucosamine 4,6-dehydratase (inverting) (TIGR03589; EC 4.2.1.115; HMM-score: 32)
    Hypothetical proteins Conserved TIGR01777 family protein (TIGR01777; HMM-score: 29.6)
    thioester reductase domain (TIGR01746; HMM-score: 27.7)
    2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (TIGR04316; EC 1.3.1.28; HMM-score: 21.9)
    acetoacetyl-CoA reductase (TIGR01829; EC 1.1.1.36; HMM-score: 21)
    3-hydroxybutyrate dehydrogenase (TIGR01963; HMM-score: 18.2)
    Metabolism Fatty acid and phospholipid metabolism Biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase (TIGR01830; EC 1.1.1.100; HMM-score: 17.8)
    Metabolism Energy metabolism Fermentation acetoin reductases (TIGR02415; EC 1.1.1.-; HMM-score: 17.3)
    UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase (TIGR04130; EC 4.2.1.-,5.1.3.-; HMM-score: 16.7)
    Unknown function Enzymes of unknown specificity SDR family mycofactocin-dependent oxidoreductase (TIGR04504; EC 1.1.99.-; HMM-score: 16.7)
    rhamnulose-1-phosphate aldolase/alcohol dehydrogenase (TIGR02632; EC 1.1.1.1,4.1.2.19; HMM-score: 16.1)
    nucleotide sugar dehydrogenase (TIGR03026; HMM-score: 14.3)
    polyketide-type polyunsaturated fatty acid synthase PfaA (TIGR02813; HMM-score: 13.6)
    2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (TIGR03206; EC 1.1.1.-; HMM-score: 13.3)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Thiamine glycine oxidase ThiO (TIGR02352; EC 1.4.3.19; HMM-score: 10.8)
  • ⊞TheSEED  :
    • UDP-glucose 4-epimerase (EC 5.1.3.2)
    Carbohydrates Di- and oligosaccharides Lactose and Galactose Uptake and Utilization  UDP-glucose 4-epimerase (EC 5.1.3.2)
    and 1 more
    Protein Metabolism Protein processing and modification N-linked Glycosylation in Bacteria  UDP-glucose 4-epimerase (EC 5.1.3.2)
  • ⊞PFAM:
    NADP_Rossmann (CL0063) GDP_Man_Dehyd; GDP-mannose 4,6 dehydratase (PF16363; HMM-score: 210.8)
    Epimerase; NAD dependent epimerase/dehydratase family (PF01370; HMM-score: 193.9)
    and 12 more
    3Beta_HSD; 3-beta hydroxysteroid dehydrogenase/isomerase family (PF01073; HMM-score: 63.1)
    Polysacc_synt_2; Polysaccharide biosynthesis protein (PF02719; HMM-score: 52.2)
    RmlD_sub_bind; RmlD substrate binding domain (PF04321; HMM-score: 42.7)
    KR; KR domain (PF08659; HMM-score: 33.4)
    NAD_binding_10; NAD(P)H-binding (PF13460; HMM-score: 30.5)
    adh_short; short chain dehydrogenase (PF00106; HMM-score: 28.7)
    NmrA; NmrA-like family (PF05368; HMM-score: 23)
    NAD_binding_4; Male sterility protein (PF07993; HMM-score: 21.1)
    UDPG_MGDP_dh_N; UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain (PF03721; HMM-score: 16)
    adh_short_C2; Enoyl-(Acyl carrier protein) reductase (PF13561; HMM-score: 15)
    TrkA_N; TrkA-N domain (PF02254; HMM-score: 13.5)
    GT-B (CL0113) Glyco_transf_4; Glycosyltransferase Family 4 (PF13439; HMM-score: 12)

Insert paragraph

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Insert paragraph

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9562
    • Cytoplasmic Membrane Score: 0.0168
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.0267
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.028275
    • TAT(Tat/SPI): 0.001278
    • LIPO(Sec/SPII): 0.001839
  • predicted transmembrane helices (TMHMM): 0

Insert paragraph

⊟Accession numbers[edit | edit source]

Insert paragraph

⊟Protein sequence[edit | edit source]

  • MQEKILVTGGAGFIGTHTVIELIQAGHQVVVVDNLVNSNRKSLEVVEGITGVEIPFYEADIRDTDTLRDIFKQEEPTGVIHFAGLKAVGESTRIPLAYYDNNIAGTVSLLKAMEENNCKNIIFSSSATVYGDPHTVPILEDFPLSVTNPYGRTKLMLEEILTDIYKADSEWNVVLLRYFNPIGAHESGDLGENPNGIPNNLLPYVTQVAVGKLEQVQVFGDDYDTEDGTGVRDYIHVVDLAKGHVAALKKIQKGSGLNVYNLGTGKGYSVLEIIQNMEKAVGRPIPYRIVERRPGDIAACYSDPAKAKAELGWEAELDITQMCEDAWRWQSKHPNGFED

Insert paragraph

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Insert paragraph

⊟Expression & Regulation[edit | edit source]

Insert paragraph

⊟Operon[edit | edit source]

Insert paragraph

⊟Regulation[edit | edit source]

  • regulator:

Insert paragraph

⊟Expression data[edit | edit source]

Insert paragraph

⊞Biological Material[edit | edit source]

This data comes from external databases and cannot be edited.

Insert paragraph

Insert paragraph

Insert paragraph

Insert paragraph

Insert paragraph

Insert paragraph

Insert paragraph

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

Insert paragraph

⊟Relevant publications[edit | edit source]

Insert paragraph