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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 17-JAN-2018
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae AP200
- locus tag: SPAP_1988 [new locus tag: SPAP_RS09840 ]
- pan locus tag?: PNEUPAN003575000
- symbol: SPAP_1988
- pan gene symbol?: lysA
- synonym:
- product: Diaminopimelate decarboxylase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPAP_1988 [new locus tag: SPAP_RS09840 ]
- symbol: SPAP_1988
- product: Diaminopimelate decarboxylase
- replicon: chromosome
- strand: -
- coordinates: 1856969..1858219
- length: 1251
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP002121 (1856969..1858219) NCBI
- BioCyc: see SPAP_RS09840
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1775 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1201ATGAAAACACCATTTATCAATAGAGAAGAGTTAGAAGCGATTGTTGCCGAGTTCCCGACT
CCCTTTCACTTGTATGATGAGAAGGGGATTCGTGAGAAGGCAAGAGCCGTCAACCAAGCT
TTTTCGTGGAACAAGGGCTTTAAGGAATATTTTGCAGTTAAGGCTACTCCAACTCCAGCT
ATTTTGAAAATTCTCCAAGAAGAAGGTTGTGGTGTGGACTGCTCTAGTTATGTAGAGCTT
TTGATGAGCCATAAACTGGACTTTCTGGGTTCTGAGATTATGTTCTCTTCCAACAACACG
CCAGACAAGGAATACGCCTATGCACGTGAATTGGGTGCGACCATTAACTTGGATGCCTTT
GAAGATATTGAACATCTGGAGAGAGTAGCAGGCATTCCAGAAATCATCTCTTGTCGTTAT
AATCCTGGAGGCGTTTTTGAACTGGGGACAGACATTATGGACAATCCTGGGGAGGCTAAG
TTTGGCATGACCAAGGACCAGCTCTTTGAAGCCTTTGCTATCTTGAAGGAAAAAGGAGCC
AAGACTTTTGGGATTCACTCCTTCCTAGCGTCCAATACCGTGACCCATCTCTATTATCCA
GAGTTGGCTCGTCAGCTCTTTGAACTGGCTGTTGAAATCAAGGAAAAGTTGGGCATTTCG
CTAGACTTTATCAATCTTTCTGGCGGTATTGGTGTTAATTATCGTCCAGACCAGGAGCCG
AACGATATCGCCTTGATTGGTGAGGGAGTTCGTAAGGTGTATGAAGAAGTTCTTACGTCA
GCAGGTCTTGGTCAGGTCAAGATTTTCACCGAATTGGGTCGTTTTATGCTGGCACCTCAC
GGTGCTCTAGTCACAAGAGTGACTCATAAGAAGGAAACCTACCGTACCTATCTAGGTGTG
GATGCCTCAGCAGTCAACCTCATGCGTCCAGCTATGTACGGAGCTTACCATCATATTAGC
AACGTGACCCATCCAGATGGACCAGCTGAAGCGGTAGATGTGGTTGGTTCACTCTGTGAA
AACAATGATAAATTTGCAGTGAATCGCGAACTGCCTCATACAGAAATCGGTGATTTGCTG
GTAATTCATGATACAGGTGCCCACGGATTTTCAATGGGCTACCAGTATAATGCCAAATTA
CGTTCTGCGGAAATCCTCTATACCGAAGAAGGTAAAGCCCGTCAAATCCGCCGTGCAGAG
CGCCCTGAGGACTATTTTGCAACCTTATATGGCTTCGATTTTGAAGAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPAP_1988 [new locus tag: SPAP_RS09840 ]
- symbol: SPAP_1988
- description: Diaminopimelate decarboxylase
- length: 416
- theoretical pI: 4.91844
- theoretical MW: 46549.4
- GRAVY: -0.248317
⊟Function[edit | edit source]
- ⊞TIGRFAM: Amino acid biosynthesis Aspartate family diaminopimelate decarboxylase (TIGR01048; EC 4.1.1.20; HMM-score: 280.8)and 2 more
- TheSEED :
- Diaminopimelate decarboxylase (EC 4.1.1.20)
- ⊞PFAM: TIM_barrel (CL0036) Orn_Arg_deC_N; Pyridoxal-dependent decarboxylase, pyridoxal binding domain (PF02784; HMM-score: 101.7)and 1 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ADM85550 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKTPFINREELEAIVAEFPTPFHLYDEKGIREKARAVNQAFSWNKGFKEYFAVKATPTPAILKILQEEGCGVDCSSYVELLMSHKLDFLGSEIMFSSNNTPDKEYAYARELGATINLDAFEDIEHLERVAGIPEIISCRYNPGGVFELGTDIMDNPGEAKFGMTKDQLFEAFAILKEKGAKTFGIHSFLASNTVTHLYYPELARQLFELAVEIKEKLGISLDFINLSGGIGVNYRPDQEPNDIALIGEGVRKVYEEVLTSAGLGQVKIFTELGRFMLAPHGALVTRVTHKKETYRTYLGVDASAVNLMRPAMYGAYHHISNVTHPDGPAEAVDVVGSLCENNDKFAVNRELPHTEIGDLLVIHDTGAHGFSMGYQYNAKLRSAEILYTEEGKARQIRRAERPEDYFATLYGFDFEE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1775 PneumoExpress