UndoCtrl+ZRedoCtrl+Shift+Z, Ctrl+Y
LinkCtrl+K

Links

Link important words to other wiki articles or even other websites. It will help readers understand the context.

Okay, got it
Special character
Edit notices
Save changes…Alt+S
ParagraphCtrl+0HeadingCtrl+2Sub-heading 1Ctrl+3Sub-heading 2Ctrl+4Sub-heading 3Ctrl+5Sub-heading 4Ctrl+6Header cellContent cellPreformattedCtrl+7Block quoteCtrl+8Page titleCtrl+1
BoldCtrl+BItalicCtrl+ISuperscriptCtrl+.SubscriptCtrl+,Computer codeCtrl+Shift+6StrikethroughCtrl+Shift+5UnderlineCtrl+UBigSmallLanguageRemoveCtrl+\, Ctrl+MMore
PubMedBasicCtrl+Shift+KRe-useMore
Bullet listNumbered listDecrease indentationShift+Tab, Ctrl+[Increase indentationTab, Ctrl+]More
Images and mediaTemplateTableCommentGalleryYour signatureReferences listMore
Read the user guideKeyboard shortcutsCtrl+/, Ctrl+Shift+/Toolbar searchCtrl+Shift+P, Ctrl+Alt+Shift+P
More
2 noticesClose
Warning: You are not logged in. Your IP address will be publicly visible if you make any edits. If you log in or create an account, your edits will be attributed to your username, along with other benefits.

You are using a browser which is not officially supported by this editor.

OptionsCategoriesPage settingsAdvanced settingsLanguagesTemplates usedView as right-to-leftCtrl+Shift+XFind and replaceCtrl+FMore
Visual editingSource editingMore
From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 20-DEC-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae OXC141
  • locus tag: SPNOXC_RS10040 [old locus tags: SPNOXC18230 SPNOXC_18230 ]
  • pan locus tag?: PNEUPAN003796000
  • symbol: SPNOXC_RS10040
  • pan gene symbol?: —
  • synonym:
  • product: glutamyl-tRNA synthetase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNOXC_RS10040 [old locus tags: SPNOXC18230 SPNOXC_18230 ]
  • symbol: SPNOXC_RS10040
  • product: glutamyl-tRNA synthetase
  • replicon: chromosome
  • strand: -
  • coordinates: 1849687..1850964
  • length: 1278
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_017592 (1849687..1850964) NCBI
  • BioCyc: SPNOXC_RS10040 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1878 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGTCTTGTTCTATCGATTTATTAAAACATCGGTATTTGAAAAATATTAAAGAAAATCCT
    GAATTGTTTGTCGGAATTGAGTTGGAGTATCCTGTTGCAAGTTTAGAAGGGGATGCTACA
    GATGTTGAAGTTATAAAGGATCTATTTCATTATTTAGTTTCTACTTTGGATCTCACCGTA
    GCAAAGGTAGATGATTTTGGCAATCTGATTCAGTTAGTAGATCCGATAAGTCAGGATGCT
    ATTTTGTTTGAAGTTTCCTATACAACGATTGAGTTTGCATTTGGTAAGGCTGAAACGATT
    CAAGAGGTCGAAAATCGTTTCAATAATTATATGAATGTAATTCAGAGAAAGTTAGCTGAA
    TCAAATCATGCTATTGTTGGCTGTGGTATCCATCCCAACTGGGATAAAAATGAGAATTGT
    CCAGTGGCTTATCCACGCTATCAGATGTTGATGGATTATTTGAATTTGAGTAGAAATATT
    ATTAAATCAGATTTACATCATTTCCCTGAATATGGTACTTTTATCTGTGGGAGCCAGGTT
    CAGCTGGATATTTCAAAAACTAACTACTTACGGGTGATTAATGCTTTTACTCAAATTGAA
    GCGGCTAAGGCTTATTTATTTGCAAACTCTGAGTTTTCGGGTGCGGATTGGGATACGAAA
    ATTTCAAGGGATATTTTCTGGGAAGAATCTATGCATGGTATCTATCCAGAGAATGTTGGG
    GTCAATGCTAGACTCCTTAATGATGAAGCTGATTTTTTTGACTATCTAAATCATTCTGCG
    ATTTTTACTGCGGAACGTGATGGGCAGACCTATTATTTTTATCCTATTCAGGCTGGGGAC
    TATTTGGCTACGCCTGAAATCCAAGCATTTGCTCTGAATGGGGATGAGGTTATTATTTAC
    CCCCAAGAGAAGGATTTTGAAACTCATCGTAGTTACCAGTACCAAGACTTAACGACTCGA
    GGAACAGTTGAGTTTCGTAGTGTGTGTACACAGCCACTTGATAGGACTTTTGCTTCTGCA
    GCTTTTCACTTGGGATTATTGGTTAATTTAGACAAGTTAGAAGCTTACTTAGAAACAGCA
    CCTTTCTTTAAAGTATTTGGTTATGATTACAAGTTTTTAAGGAGACAATTTTCTAAGAAA
    AATCTTACAGATGAGGAAGAAACTACGATTATTGAATTTTCCAAAGACTTACTCCTACTA
    GCTGAGGAGGGACTAGTGGTGAGAAATAAGGAAGAAATGACCTATTTACAGCCTTTGAGA
    GAAGAATTGAGCCTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1278

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNOXC_RS10040 [old locus tags: SPNOXC18230 SPNOXC_18230 ]
  • symbol: SPNOXC_RS10040
  • description: glutamyl-tRNA synthetase
  • length: 425
  • theoretical pI: 4.39104
  • theoretical MW: 49097
  • GRAVY: -0.259059

⊟Function[edit | edit source]

  • ⊞⊞TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Glutathione and analogs glutamate--cysteine ligase (TIGR01436; EC 6.3.2.2; HMM-score: 37)
    and 2 more
    carboxylate-amine ligase, YbdK family (TIGR02050; EC 6.3.-.-; HMM-score: 20.8)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Heme, porphyrin, and cobalamin alpha-ribazole phosphatase (TIGR03162; EC 3.1.3.73; HMM-score: 11.3)
  • TheSEED: see SPNOXC18230
  • PFAM:
    GCS (CL0286) GCS2; Glutamate-cysteine ligase family 2(GCS2) (PF04107; HMM-score: 16.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001284
    • TAT(Tat/SPI): 0.000125
    • LIPO(Sec/SPII): 0.000193
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001277917 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSCSIDLLKHRYLKNIKENPELFVGIELEYPVASLEGDATDVEVIKDLFHYLVSTLDLTVAKVDDFGNLIQLVDPISQDAILFEVSYTTIEFAFGKAETIQEVENRFNNYMNVIQRKLAESNHAIVGCGIHPNWDKNENCPVAYPRYQMLMDYLNLSRNIIKSDLHHFPEYGTFICGSQVQLDISKTNYLRVINAFTQIEAAKAYLFANSEFSGADWDTKISRDIFWEESMHGIYPENVGVNARLLNDEADFFDYLNHSAIFTAERDGQTYYFYPIQAGDYLATPEIQAFALNGDEVIIYPQEKDFETHRSYQYQDLTTRGTVEFRSVCTQPLDRTFASAAFHLGLLVNLDKLEAYLETAPFFKVFGYDYKFLRRQFSKKNLTDEEETTIIEFSKDLLLLAEEGLVVRNKEEMTYLQPLREELSL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPNOXC_RS10040&oldid=119964"
Insert paragraph

NCBI: 20-DEC-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae OXC141
  • locus tag: SPNOXC_RS10040 [old locus tags: SPNOXC18230 SPNOXC_18230 ]
  • pan locus tag?: PNEUPAN003796000
  • symbol: SPNOXC_RS10040
  • pan gene symbol?: —
  • synonym:
  • product: glutamyl-tRNA synthetase

Insert paragraph

⊟Genome View[edit | edit source]

Insert paragraph

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNOXC_RS10040 [old locus tags: SPNOXC18230 SPNOXC_18230 ]
  • symbol: SPNOXC_RS10040
  • product: glutamyl-tRNA synthetase
  • replicon: chromosome
  • strand: -
  • coordinates: 1849687..1850964
  • length: 1278
  • essential: unknown

Insert paragraph

⊟Accession numbers[edit | edit source]

  • Location: NC_017592 (1849687..1850964) NCBI
  • BioCyc: SPNOXC_RS10040 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1878 PneumoBrowse

Insert paragraph

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGTCTTGTTCTATCGATTTATTAAAACATCGGTATTTGAAAAATATTAAAGAAAATCCT
    GAATTGTTTGTCGGAATTGAGTTGGAGTATCCTGTTGCAAGTTTAGAAGGGGATGCTACA
    GATGTTGAAGTTATAAAGGATCTATTTCATTATTTAGTTTCTACTTTGGATCTCACCGTA
    GCAAAGGTAGATGATTTTGGCAATCTGATTCAGTTAGTAGATCCGATAAGTCAGGATGCT
    ATTTTGTTTGAAGTTTCCTATACAACGATTGAGTTTGCATTTGGTAAGGCTGAAACGATT
    CAAGAGGTCGAAAATCGTTTCAATAATTATATGAATGTAATTCAGAGAAAGTTAGCTGAA
    TCAAATCATGCTATTGTTGGCTGTGGTATCCATCCCAACTGGGATAAAAATGAGAATTGT
    CCAGTGGCTTATCCACGCTATCAGATGTTGATGGATTATTTGAATTTGAGTAGAAATATT
    ATTAAATCAGATTTACATCATTTCCCTGAATATGGTACTTTTATCTGTGGGAGCCAGGTT
    CAGCTGGATATTTCAAAAACTAACTACTTACGGGTGATTAATGCTTTTACTCAAATTGAA
    GCGGCTAAGGCTTATTTATTTGCAAACTCTGAGTTTTCGGGTGCGGATTGGGATACGAAA
    ATTTCAAGGGATATTTTCTGGGAAGAATCTATGCATGGTATCTATCCAGAGAATGTTGGG
    GTCAATGCTAGACTCCTTAATGATGAAGCTGATTTTTTTGACTATCTAAATCATTCTGCG
    ATTTTTACTGCGGAACGTGATGGGCAGACCTATTATTTTTATCCTATTCAGGCTGGGGAC
    TATTTGGCTACGCCTGAAATCCAAGCATTTGCTCTGAATGGGGATGAGGTTATTATTTAC
    CCCCAAGAGAAGGATTTTGAAACTCATCGTAGTTACCAGTACCAAGACTTAACGACTCGA
    GGAACAGTTGAGTTTCGTAGTGTGTGTACACAGCCACTTGATAGGACTTTTGCTTCTGCA
    GCTTTTCACTTGGGATTATTGGTTAATTTAGACAAGTTAGAAGCTTACTTAGAAACAGCA
    CCTTTCTTTAAAGTATTTGGTTATGATTACAAGTTTTTAAGGAGACAATTTTCTAAGAAA
    AATCTTACAGATGAGGAAGAAACTACGATTATTGAATTTTCCAAAGACTTACTCCTACTA
    GCTGAGGAGGGACTAGTGGTGAGAAATAAGGAAGAAATGACCTATTTACAGCCTTTGAGA
    GAAGAATTGAGCCTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1278

Insert paragraph

This data comes from external databases and cannot be edited.

Insert paragraph

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNOXC_RS10040 [old locus tags: SPNOXC18230 SPNOXC_18230 ]
  • symbol: SPNOXC_RS10040
  • description: glutamyl-tRNA synthetase
  • length: 425
  • theoretical pI: 4.39104
  • theoretical MW: 49097
  • GRAVY: -0.259059

Insert paragraph

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Glutathione and analogs glutamate--cysteine ligase (TIGR01436; EC 6.3.2.2; HMM-score: 37)
    and 2 more
    carboxylate-amine ligase, YbdK family (TIGR02050; EC 6.3.-.-; HMM-score: 20.8)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Heme, porphyrin, and cobalamin alpha-ribazole phosphatase (TIGR03162; EC 3.1.3.73; HMM-score: 11.3)
  • TheSEED: see SPNOXC18230
  • PFAM:
    GCS (CL0286) GCS2; Glutamate-cysteine ligase family 2(GCS2) (PF04107; HMM-score: 16.7)

Insert paragraph

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Insert paragraph

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001284
    • TAT(Tat/SPI): 0.000125
    • LIPO(Sec/SPII): 0.000193
  • predicted transmembrane helices (TMHMM): 0

Insert paragraph

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001277917 NCBI
  • UniProt:

Insert paragraph

⊟Protein sequence[edit | edit source]

  • MSCSIDLLKHRYLKNIKENPELFVGIELEYPVASLEGDATDVEVIKDLFHYLVSTLDLTVAKVDDFGNLIQLVDPISQDAILFEVSYTTIEFAFGKAETIQEVENRFNNYMNVIQRKLAESNHAIVGCGIHPNWDKNENCPVAYPRYQMLMDYLNLSRNIIKSDLHHFPEYGTFICGSQVQLDISKTNYLRVINAFTQIEAAKAYLFANSEFSGADWDTKISRDIFWEESMHGIYPENVGVNARLLNDEADFFDYLNHSAIFTAERDGQTYYFYPIQAGDYLATPEIQAFALNGDEVIIYPQEKDFETHRSYQYQDLTTRGTVEFRSVCTQPLDRTFASAAFHLGLLVNLDKLEAYLETAPFFKVFGYDYKFLRRQFSKKNLTDEEETTIIEFSKDLLLLAEEGLVVRNKEEMTYLQPLREELSL

Insert paragraph

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Insert paragraph

⊟Expression & Regulation[edit | edit source]

Insert paragraph

⊟Operon[edit | edit source]

Insert paragraph

⊟Regulation[edit | edit source]

  • regulator:

Insert paragraph

⊟Expression data[edit | edit source]

Insert paragraph

⊞Biological Material[edit | edit source]

Insert paragraph

Insert paragraph

Insert paragraph

Insert paragraph

Insert paragraph

Insert paragraph

Insert paragraph

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

Insert paragraph

⊟Relevant publications[edit | edit source]

Insert paragraph