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From PneumoWiki
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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 17-JAN-2018

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae AP200
  • locus tag: SPAP_2242 [new locus tag: SPAP_RS11085 ]
  • pan locus tag?: PNEUPAN003919000
  • symbol: SPAP_2242
  • pan gene symbol?: thiX
  • synonym:
  • product: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAP_2242 [new locus tag: SPAP_RS11085 ]
  • symbol: SPAP_2242
  • product: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
  • replicon: chromosome
  • strand: -
  • coordinates: 2088630..2089388
  • length: 759
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGAGAAACTTGAGAAGTATACTGAGACGACACATTAGTCTATTGGGCTTTCTCGGAGTC
    TTGTCAATCTGGCAGTTAGCAGGTTTTCTTAAACTTCTCCCCAAGTTTATCCTGCCGACA
    CCTCTTGAAATTCTCCAGCCCTTTGTTCGTGACAGAGAATTTCTCTGGCACCATAGCTGG
    GCGACCTTGAGAGTGGCTTTACTGGGGCTGATTTTGGGAGTTTTGATTGCCTGTCTTATG
    GCTGTACTCATGGATAGTTTGACTTGGCTCAATGACCTGATTTACCCTATGATGGTGGTC
    ATTCAGACCATTCCGACCATTGCCATAGCTCCTATCCTGGTCTTGTGGCTAGGTTATGGG
    ATTTTGCCCAAGATTGTCTTGATTATCTTAACGACAACCTTTCCCATCATCGTCAGCATT
    TTGGACGGTTTTAGGCATTGCGACAAGGATATGCTGACCTTGTTTAGTCTGATGCGGGCC
    AAGCCTTGGCAAATCCTGTGGCATTTTAAAATTCCAGTCAGCCTGCCCTACTTTTATGCT
    GGTCTGAGGGTCAGTGTCTCCTACGCTTTTATCACAACAGTGGTATCTGAGTGGTTGGGA
    GGCTTTGAGGGGCTTGGTGTTTATATGATTCAGTCCAAGAAATTGTTTCAGTATGATACC
    ATGTTCGCTATTATTATTCTGGTATCGATTATCAGCCTTTTGGGTATGAAGTTGGTCGAT
    ATTAGTGAAAAATATGTTATTAAATGGAAACGTTCGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    759

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAP_2242 [new locus tag: SPAP_RS11085 ]
  • symbol: SPAP_2242
  • description: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
  • length: 252
  • theoretical pI: 10.2153
  • theoretical MW: 28919.1
  • GRAVY: 0.884921

⊟Function[edit | edit source]

  • ⊞⊞TIGRFAM:
    Metabolism Transport and binding proteins Anions nitrate ABC transporter, permease protein (TIGR01183; HMM-score: 50.9)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 42)
    and 2 more
    choline ABC transporter, permease protein (TIGR03416; HMM-score: 38.7)
    Metabolism Transport and binding proteins Amino acids, peptides and amines amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family (TIGR01726; HMM-score: 8.1)
  • TheSEED  :
    • Thiamin ABC transporter ThiX, transmembrane component
    Cofactors, Vitamins, Prosthetic Groups, Pigments Cofactors, Vitamins, Prosthetic Groups, Pigments - no subcategory Thiamin biosynthesis  Hydroxymethylpyrimidine ABC transporter, transmembrane component
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 100.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • ⊞⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.018542
    • TAT(Tat/SPI): 0.003442
    • LIPO(Sec/SPII): 0.011356
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ADM85773 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MRNLRSILRRHISLLGFLGVLSIWQLAGFLKLLPKFILPTPLEILQPFVRDREFLWHHSWATLRVALLGLILGVLIACLMAVLMDSLTWLNDLIYPMMVVIQTIPTIAIAPILVLWLGYGILPKIVLIILTTTFPIIVSILDGFRHCDKDMLTLFSLMRAKPWQILWHFKIPVSLPYFYAGLRVSVSYAFITTVVSEWLGGFEGLGVYMIQSKKLFQYDTMFAIIILVSIISLLGMKLVDISEKYVIKWKRS

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPAP_2242&oldid=44432"
Insert paragraph

NCBI: 17-JAN-2018

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae AP200
  • locus tag: SPAP_2242 [new locus tag: SPAP_RS11085 ]
  • pan locus tag?: PNEUPAN003919000
  • symbol: SPAP_2242
  • pan gene symbol?: thiX
  • synonym:
  • product: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component

Insert paragraph

⊟Genome View[edit | edit source]

Insert paragraph

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAP_2242 [new locus tag: SPAP_RS11085 ]
  • symbol: SPAP_2242
  • product: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
  • replicon: chromosome
  • strand: -
  • coordinates: 2088630..2089388
  • length: 759
  • essential: unknown

Insert paragraph

⊟Accession numbers[edit | edit source]

Insert paragraph

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGAGAAACTTGAGAAGTATACTGAGACGACACATTAGTCTATTGGGCTTTCTCGGAGTC
    TTGTCAATCTGGCAGTTAGCAGGTTTTCTTAAACTTCTCCCCAAGTTTATCCTGCCGACA
    CCTCTTGAAATTCTCCAGCCCTTTGTTCGTGACAGAGAATTTCTCTGGCACCATAGCTGG
    GCGACCTTGAGAGTGGCTTTACTGGGGCTGATTTTGGGAGTTTTGATTGCCTGTCTTATG
    GCTGTACTCATGGATAGTTTGACTTGGCTCAATGACCTGATTTACCCTATGATGGTGGTC
    ATTCAGACCATTCCGACCATTGCCATAGCTCCTATCCTGGTCTTGTGGCTAGGTTATGGG
    ATTTTGCCCAAGATTGTCTTGATTATCTTAACGACAACCTTTCCCATCATCGTCAGCATT
    TTGGACGGTTTTAGGCATTGCGACAAGGATATGCTGACCTTGTTTAGTCTGATGCGGGCC
    AAGCCTTGGCAAATCCTGTGGCATTTTAAAATTCCAGTCAGCCTGCCCTACTTTTATGCT
    GGTCTGAGGGTCAGTGTCTCCTACGCTTTTATCACAACAGTGGTATCTGAGTGGTTGGGA
    GGCTTTGAGGGGCTTGGTGTTTATATGATTCAGTCCAAGAAATTGTTTCAGTATGATACC
    ATGTTCGCTATTATTATTCTGGTATCGATTATCAGCCTTTTGGGTATGAAGTTGGTCGAT
    ATTAGTGAAAAATATGTTATTAAATGGAAACGTTCGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    759

Insert paragraph

This data comes from external databases and cannot be edited.

Insert paragraph

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAP_2242 [new locus tag: SPAP_RS11085 ]
  • symbol: SPAP_2242
  • description: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
  • length: 252
  • theoretical pI: 10.2153
  • theoretical MW: 28919.1
  • GRAVY: 0.884921

Insert paragraph

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Metabolism Transport and binding proteins Anions nitrate ABC transporter, permease protein (TIGR01183; HMM-score: 50.9)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 42)
    and 2 more
    choline ABC transporter, permease protein (TIGR03416; HMM-score: 38.7)
    Metabolism Transport and binding proteins Amino acids, peptides and amines amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family (TIGR01726; HMM-score: 8.1)
  • TheSEED  :
    • Thiamin ABC transporter ThiX, transmembrane component
    Cofactors, Vitamins, Prosthetic Groups, Pigments Cofactors, Vitamins, Prosthetic Groups, Pigments - no subcategory Thiamin biosynthesis  Hydroxymethylpyrimidine ABC transporter, transmembrane component
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 100.1)

Insert paragraph

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Insert paragraph

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.018542
    • TAT(Tat/SPI): 0.003442
    • LIPO(Sec/SPII): 0.011356
  • predicted transmembrane helices (TMHMM): 6

Insert paragraph

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ADM85773 NCBI
  • UniProt:

Insert paragraph

⊟Protein sequence[edit | edit source]

  • MRNLRSILRRHISLLGFLGVLSIWQLAGFLKLLPKFILPTPLEILQPFVRDREFLWHHSWATLRVALLGLILGVLIACLMAVLMDSLTWLNDLIYPMMVVIQTIPTIAIAPILVLWLGYGILPKIVLIILTTTFPIIVSILDGFRHCDKDMLTLFSLMRAKPWQILWHFKIPVSLPYFYAGLRVSVSYAFITTVVSEWLGGFEGLGVYMIQSKKLFQYDTMFAIIILVSIISLLGMKLVDISEKYVIKWKRS

Insert paragraph

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Insert paragraph

⊟Expression & Regulation[edit | edit source]

Insert paragraph

⊟Operon[edit | edit source]

Insert paragraph

⊟Regulation[edit | edit source]

Insert paragraph

⊟Expression data[edit | edit source]

Insert paragraph

⊞Biological Material[edit | edit source]

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

Insert paragraph

⊟Relevant publications[edit | edit source]

Insert paragraph