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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 27-FEB-2015

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SPNA45
  • locus tag: SPNA45_00979 [new locus tag: SPNA45_RS05505 ]
  • pan locus tag?: PNEUPAN002469000
  • symbol: fps
  • pan gene symbol?: ispA
  • synonym:
  • product: putative geranyltranstransferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNA45_00979 [new locus tag: SPNA45_RS05505 ]
  • symbol: fps
  • product: putative geranyltranstransferase
  • replicon: chromosome
  • strand: +
  • coordinates: 969934..970809
  • length: 876
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAAAAAGCAAGAAAAATTAGCTCTTGTCGAGTCGGCTTTGGAAGATTTTTATGGAGAC
    CAGCAGTTTGCCTCTAGTTTACGGGAGTCTGTTCTCTATTCTATTCATGCTGGTGGCAAG
    CGTATTCGGCCTTTTCTCTTGTTAGAAGTTCTGGAAGCCTTGCAGGTTACCATCAAACCT
    GCTCACGCGCAGGTAGCTACTGCCTTGGAGATGATTCATACAGGGAGCTTGATTCACGAT
    GACCTTCCTGCTATGGATGATGACGATTATCGAAGAGGGCGGTTAACCAATCACAAGAAA
    TTCGGTGAAGCTATGGCCATTTTGGCTGGAGATGCCTTATTCTTAGACTCATATGCCTTG
    ATTGCGCAGGCAGATTTGCCAAGTCAGATTAAGGTGGACTTGATTGCCAACTTCTCCCTT
    GCTTCAGGTAGTCTGGGTATGGTGGCAGGGCAAGTTTTGGATATGGAGGGCGAACACCAG
    CACTTGTCTTTGGAAGAACTTCAGACTATTCATGCCAATAAGACTGGGAAGTTACTAGCC
    TATCCCTTCCAAGCGGCAGCTATTATAGCTGAATTGTCACCTGAAATGCAGGTGAAGCTG
    AAAACTGTGGGTGAATTGATTGGACTTGCTTTTCAAGTCAGAGATGATGTACTGGATGTG
    ACAGCTAGTTTTGAGGAAATCGGCAAGACACCTCAAAAGGATCTGCAGGCAGAAAAATCA
    ACCTATCCTGCCCTGTTGGGCTTGGAAGAGTCCATTGCCTTTTGTAACCAAACCCTGGAT
    CAAGCTAATGAAAAATTAGAAGAAATTGCCCAGCAGCTTCCCTTTGAAACAGAATCGATT
    GTAAGTGTAGTAGAAAGTTTGAGAATCAATGGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    876

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNA45_00979 [new locus tag: SPNA45_RS05505 ]
  • symbol: Fps
  • description: putative geranyltranstransferase
  • length: 291
  • theoretical pI: 4.45189
  • theoretical MW: 31902.2
  • GRAVY: -0.0278351

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Menaquinone and ubiquinone solanesyl diphosphate synthase (TIGR02749; EC 2.5.1.-; HMM-score: 128.4)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Menaquinone and ubiquinone heptaprenyl diphosphate synthase component II (TIGR02748; EC 2.5.1.30; HMM-score: 116.9)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • ⊞PFAM:
    Terp_synthase (CL0613) polyprenyl_synt; Polyprenyl synthetase (PF00348; HMM-score: 191.9)
    and 1 more
    no clan defined ANIS5_cation-bd; SXP/RAL-2 family protein Ani s 5-like, metal-binding domain (PF02520; HMM-score: 12.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.021533
    • TAT(Tat/SPI): 0.016003
    • LIPO(Sec/SPII): 0.000357
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CCM08264 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKKQEKLALVESALEDFYGDQQFASSLRESVLYSIHAGGKRIRPFLLLEVLEALQVTIKPAHAQVATALEMIHTGSLIHDDLPAMDDDDYRRGRLTNHKKFGEAMAILAGDALFLDSYALIAQADLPSQIKVDLIANFSLASGSLGMVAGQVLDMEGEHQHLSLEELQTIHANKTGKLLAYPFQAAAIIAELSPEMQVKLKTVGELIGLAFQVRDDVLDVTASFEEIGKTPQKDLQAEKSTYPALLGLEESIAFCNQTLDQANEKLEEIAQQLPFETESIVSVVESLRING

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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