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From PneumoWiki
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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 26-AUG-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae OXC141
  • locus tag: SPNOXC09020 [new locus tag: SPNOXC_RS04885 ]
  • pan locus tag?: PNEUPAN002030000
  • symbol: lmb
  • pan gene symbol?: lmb
  • synonym: adcAII
  • product: laminin binding protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNOXC09020 [new locus tag: SPNOXC_RS04885 ]
  • symbol: lmb
  • product: laminin binding protein
  • replicon: chromosome
  • strand: +
  • coordinates: 909215..910132
  • length: 918
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGAAGAAACAAAATTTATTTTTAGTCCTGTTAAGTGTCTTTCTTTTGTGCTTGGGGGCT
    TGTGGTCAAAAGGAAAGTCAGGCAGGAAAGGGGATGAAAATTGTGACCAGTTTTTATCCT
    ATCTACGCTATGGTTAAGGAAGTATCTGGTGACTTGAATGATGTTCGGATGATTCAGTCA
    AGTAGTGGTATTCACTCCTTTGAACCTTCGGCAAATGATATCGCAGCCATCTATGATTCA
    GATGTCTTTGTTTACCATTCTCATACACTCGAATCTTGGGCAGGAAGTCTGGATCCAAAT
    CTAAAAAAATCCAAAGTGAAGGTCTTAGAGGCTTCTGAGGGAATGACCTTGGAACGTGTC
    CCTGGACTAGAGGATGTGGAAGCAGGGGATGGAGTTGATGAAAAAACGCTCTATGACCCT
    CACACATGGCTAGATCCTGAAAAAGCTGGAGAAGAAGCCCAAATTATCGCTGATAAACTT
    TCAGAGGTGGATAGTGAGCATAAAGAGACTTATCAAAAAAATGCGCAAGCCTTTATCAAA
    AAAGCTCAGGAATTGACTAAGAAATTCCAGTCTAAATTTGAAAAAGCGACTCAGAAAACA
    TTTGTAACACAACATACAGCCTTTTCTTATCTAGCGAAGAGATTTGGGCTTAATCAACTT
    GGTATTGCAGGCATCTCTCCTGAACAAGAACCAAGTCCACGACAATTAACAGAAATTCAG
    GAATTTGTTAAAACCTATAAGGTTAAAACGATTTTTACAGAAAGTAATGCTTCTTCAAAA
    GTAGCTGAAACTCTTGTCAAATCAACAGGTGTGGGTCTTAAAACTCTGAATCCTTTAGAG
    GCAGACCCACAAAATGACAAGACCTATTTAGAAAATCTGGAAGAAAATATGAGTGTTCTA
    GCAGAAGAATTAAAGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    918

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNOXC09020 [new locus tag: SPNOXC_RS04885 ]
  • symbol: Lmb
  • description: laminin binding protein
  • length: 305
  • theoretical pI: 5.03294
  • theoretical MW: 33897.2
  • GRAVY: -0.417049

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Unknown substrate anchored repeat ABC transporter, substrate-binding protein (TIGR03772; HMM-score: 92.6)
  • TheSEED  :
    • Laminin-binding surface protein
  • ⊞⊞PFAM:
    Chelatase (CL0043) ZnuA; Zinc-uptake complex component A periplasmic (PF01297; HMM-score: 227.5)
    and 4 more
    Peptidase_MH (CL0035) SpoIIP; Stage II sporulation protein P (SpoIIP) (PF07454; HMM-score: 16.1)
    no clan defined DUF1598; Protein of unknown function (DUF1598) (PF07643; HMM-score: 13.6)
    LEDGF; Lens epithelium-derived growth factor (LEDGF) (PF11467; HMM-score: 11.9)
    LppaM (CL0421) LPAM_2; Prokaryotic lipoprotein-attachment site (PF13627; HMM-score: 9.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.05
    • Cytoplasmic Membrane Score: 8.78
    • Cellwall Score: 0.08
    • Extracellular Score: 0.09
    • Internal Helix: 1
  • ⊞⊞SignalP: Signal peptide LIPO(Sec/SPII) length 20 aa
    • SP(Sec/SPI): 0.012158
    • TAT(Tat/SPI): 0.000107
    • LIPO(Sec/SPII): 0.987443
    • Cleavage Site: CS pos: 20-21. LGA-CG. Pr: 0.9835
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CBW32560 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKKQNLFLVLLSVFLLCLGACGQKESQAGKGMKIVTSFYPIYAMVKEVSGDLNDVRMIQSSSGIHSFEPSANDIAAIYDSDVFVYHSHTLESWAGSLDPNLKKSKVKVLEASEGMTLERVPGLEDVEAGDGVDEKTLYDPHTWLDPEKAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQSKFEKATQKTFVTQHTAFSYLAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKTLNPLEADPQNDKTYLENLEENMSVLAEELK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPNOXC09020&oldid=121051"
Insert paragraph

NCBI: 26-AUG-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae OXC141
  • locus tag: SPNOXC09020 [new locus tag: SPNOXC_RS04885 ]
  • pan locus tag?: PNEUPAN002030000
  • symbol: lmb
  • pan gene symbol?: lmb
  • synonym: adcAII
  • product: laminin binding protein

Insert paragraph

⊟Genome View[edit | edit source]

Insert paragraph

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNOXC09020 [new locus tag: SPNOXC_RS04885 ]
  • symbol: lmb
  • product: laminin binding protein
  • replicon: chromosome
  • strand: +
  • coordinates: 909215..910132
  • length: 918
  • essential: unknown

Insert paragraph

⊟Accession numbers[edit | edit source]

Insert paragraph

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGAAGAAACAAAATTTATTTTTAGTCCTGTTAAGTGTCTTTCTTTTGTGCTTGGGGGCT
    TGTGGTCAAAAGGAAAGTCAGGCAGGAAAGGGGATGAAAATTGTGACCAGTTTTTATCCT
    ATCTACGCTATGGTTAAGGAAGTATCTGGTGACTTGAATGATGTTCGGATGATTCAGTCA
    AGTAGTGGTATTCACTCCTTTGAACCTTCGGCAAATGATATCGCAGCCATCTATGATTCA
    GATGTCTTTGTTTACCATTCTCATACACTCGAATCTTGGGCAGGAAGTCTGGATCCAAAT
    CTAAAAAAATCCAAAGTGAAGGTCTTAGAGGCTTCTGAGGGAATGACCTTGGAACGTGTC
    CCTGGACTAGAGGATGTGGAAGCAGGGGATGGAGTTGATGAAAAAACGCTCTATGACCCT
    CACACATGGCTAGATCCTGAAAAAGCTGGAGAAGAAGCCCAAATTATCGCTGATAAACTT
    TCAGAGGTGGATAGTGAGCATAAAGAGACTTATCAAAAAAATGCGCAAGCCTTTATCAAA
    AAAGCTCAGGAATTGACTAAGAAATTCCAGTCTAAATTTGAAAAAGCGACTCAGAAAACA
    TTTGTAACACAACATACAGCCTTTTCTTATCTAGCGAAGAGATTTGGGCTTAATCAACTT
    GGTATTGCAGGCATCTCTCCTGAACAAGAACCAAGTCCACGACAATTAACAGAAATTCAG
    GAATTTGTTAAAACCTATAAGGTTAAAACGATTTTTACAGAAAGTAATGCTTCTTCAAAA
    GTAGCTGAAACTCTTGTCAAATCAACAGGTGTGGGTCTTAAAACTCTGAATCCTTTAGAG
    GCAGACCCACAAAATGACAAGACCTATTTAGAAAATCTGGAAGAAAATATGAGTGTTCTA
    GCAGAAGAATTAAAGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    918

Insert paragraph

This data comes from external databases and cannot be edited.

Insert paragraph

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNOXC09020 [new locus tag: SPNOXC_RS04885 ]
  • symbol: Lmb
  • description: laminin binding protein
  • length: 305
  • theoretical pI: 5.03294
  • theoretical MW: 33897.2
  • GRAVY: -0.417049

Insert paragraph

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Unknown substrate anchored repeat ABC transporter, substrate-binding protein (TIGR03772; HMM-score: 92.6)
  • TheSEED  :
    • Laminin-binding surface protein
  • ⊞PFAM:
    Chelatase (CL0043) ZnuA; Zinc-uptake complex component A periplasmic (PF01297; HMM-score: 227.5)
    and 4 more
    Peptidase_MH (CL0035) SpoIIP; Stage II sporulation protein P (SpoIIP) (PF07454; HMM-score: 16.1)
    no clan defined DUF1598; Protein of unknown function (DUF1598) (PF07643; HMM-score: 13.6)
    LEDGF; Lens epithelium-derived growth factor (LEDGF) (PF11467; HMM-score: 11.9)
    LppaM (CL0421) LPAM_2; Prokaryotic lipoprotein-attachment site (PF13627; HMM-score: 9.7)

Insert paragraph

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Insert paragraph

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.05
    • Cytoplasmic Membrane Score: 8.78
    • Cellwall Score: 0.08
    • Extracellular Score: 0.09
    • Internal Helix: 1
  • ⊞SignalP: Signal peptide LIPO(Sec/SPII) length 20 aa
    • SP(Sec/SPI): 0.012158
    • TAT(Tat/SPI): 0.000107
    • LIPO(Sec/SPII): 0.987443
    • Cleavage Site: CS pos: 20-21. LGA-CG. Pr: 0.9835
  • predicted transmembrane helices (TMHMM): 0

Insert paragraph

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CBW32560 NCBI
  • UniProt:

Insert paragraph

⊟Protein sequence[edit | edit source]

  • MKKQNLFLVLLSVFLLCLGACGQKESQAGKGMKIVTSFYPIYAMVKEVSGDLNDVRMIQSSSGIHSFEPSANDIAAIYDSDVFVYHSHTLESWAGSLDPNLKKSKVKVLEASEGMTLERVPGLEDVEAGDGVDEKTLYDPHTWLDPEKAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQSKFEKATQKTFVTQHTAFSYLAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKTLNPLEADPQNDKTYLENLEENMSVLAEELK

Insert paragraph

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Insert paragraph

⊟Expression & Regulation[edit | edit source]

Insert paragraph

⊟Operon[edit | edit source]

Insert paragraph

⊟Regulation[edit | edit source]

Insert paragraph

⊟Expression data[edit | edit source]

Insert paragraph

⊞Biological Material[edit | edit source]

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

Insert paragraph

⊟Relevant publications[edit | edit source]

Insert paragraph