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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 09-APR-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae TIGR4
  • locus tag: SP_RS00280 [old locus tag: SP_0047 ]
  • pan locus tag?: PNEUPAN000693000
  • symbol: SP_RS00280
  • pan gene symbol?: purM
  • synonym:
  • product: phosphoribosylformylglycinamidine cyclo-ligase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP_RS00280 [old locus tag: SP_0047 ]
  • symbol: SP_RS00280
  • product: phosphoribosylformylglycinamidine cyclo-ligase
  • replicon: chromosome
  • strand: +
  • coordinates: 50889..51911
  • length: 1023
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_003028 (50889..51911) NCBI
  • BioCyc: SP_RS00280 BioCyc
  • MicrobesOnline: see SP_0047
  • PneumoBrowse for strain D39V: SPV_0054 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGGCAAATAAAAATGCGTACGCTCAATCTGGTGTGGATGTTGAAGCGGGTTATGAAGTT
    GTTGAACGGATTAAAAAGCACGTGGCCCGTACGGAGCGTGCAGGTGTCATGGGAGCTCTT
    GGTGGCTTTGGTGGTATGTTTGACCTTTCCAAGACTGGGGTTAAAGAACCCGTCTTGATT
    TCAGGGACTGACGGTGTCGGAACCAAGCTCATGTTGGCTATCAAGTACGACAAGCACGAT
    ACCATCGGGCAGGACTGTGTGGCCATGTGTGTCAACGACATCATTGCTGCAGGTGCGGAA
    CCCCTCTATTTTCTCGACTACGTAGCGACAGGGAAGAATGAACCAGCTAAGCTAGAACAA
    GTGGTTGCTGGTGTGGCAGAAGGTTGTGTGCAGGCTGGTGCTGCCCTCATCGGTGGGGAA
    ACGGCTGAAATGCCGGGCATGTACGGCGAAGACGACTATGACTTGGCTGGTTTTGCGGTC
    GGTGTGGCTGAAAAATCTCAAATCATTGACGGTTCAAAGGTGGTAGAGGGAGATGTTCTT
    CTCGGACTTGCTTCAAGTGGGATTCACTCAAATGGTTACTCTTTGGTTCGTCGTGTCTTT
    GCGGATTACACAGGTGAGGAAGTCCTACCAGAATTGGAAGGCAAGAAACTTAAGGAAGTT
    CTACTTGAGCCGACTCGTATCTATGTCAAGGCTGTCTTGCCGCTCATCAAAGAAGAGTTG
    GTCAACGGCATTGCCCACATCACAGGTGGTGGCTTTATCGAAAATGTCCCTCGTATGTTT
    GCAGATGACCTAGCTGCTGAAATTGATGAAAGTAAAGTTCCAGTGCTTCCAATTTTCAAA
    ACCCTTGAAAAATACGGTCAGATTAAACACGAAGAAATGTTTGAAATCTTCAATATGGGT
    GTGGGACTTATGTTGGCGGTCAGCCCTGAAAATGTAGAGCGTGTAAAAGAATTGTTGGAT
    GAAGCAGTCTATGAAATTGGTCGCATCGTCAAGAAAGAAAACGAAAGTGTCATTATCAAA
    TGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1023

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP_RS00280 [old locus tag: SP_0047 ]
  • symbol: SP_RS00280
  • description: phosphoribosylformylglycinamidine cyclo-ligase
  • length: 340
  • theoretical pI: 4.45605
  • theoretical MW: 36501.8
  • GRAVY: 0.0652941

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 6.3.3.1?  ExPASy
    Phosphoribosylformylglycinamidine cyclo-ligase ATP + 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine = ADP + phosphate + 5-amino-1-(5-phospho-D-ribosyl)imidazole
  • ⊞TIGRFAM:
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis phosphoribosylformylglycinamidine cyclo-ligase (TIGR00878; EC 6.3.3.1; HMM-score: 453.1)
    and 8 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Thiamine thiamine-phosphate kinase (TIGR01379; EC 2.7.4.16; HMM-score: 52.1)
    selenide, water dikinase (TIGR00476; EC 2.7.9.3; HMM-score: 37.2)
    Metabolism Energy metabolism Methanogenesis putative methanogenesis marker protein 2 (TIGR03267; HMM-score: 30.6)
    hydrogenase expression/formation protein HypE (TIGR02124; HMM-score: 29.7)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis phosphoribosylformylglycinamidine synthase II (TIGR01736; EC 6.3.5.3; HMM-score: 21.5)
    Unknown function Enzymes of unknown specificity AIR synthase-related protein, MSMEG_0567 C-terminal family (TIGR04050; HMM-score: 16.3)
    Unknown function Enzymes of unknown specificity AIR synthase-related protein, sll0787 family (TIGR04049; HMM-score: 14)
    Genetic information processing Protein synthesis Other ribosome-associated GTPase EngA (TIGR03594; HMM-score: 12.4)
  • TheSEED: see SP_0047
  • ⊞PFAM:
    no clan defined AIRS_C; AIR synthase related protein, C-terminal domain (PF02769; HMM-score: 129.2)
    and 2 more
    AIRS; AIR synthase related protein, N-terminal domain (PF00586; HMM-score: 75)
    HTH (CL0123) DUF4423; Domain of unknown function (DUF4423) (PF14394; HMM-score: 13.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.024262
    • TAT(Tat/SPI): 0.01836
    • LIPO(Sec/SPII): 0.001607
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MANKNAYAQSGVDVEAGYEVVERIKKHVARTERAGVMGALGGFGGMFDLSKTGVKEPVLISGTDGVGTKLMLAIKYDKHDTIGQDCVAMCVNDIIAAGAEPLYFLDYVATGKNEPAKLEQVVAGVAEGCVQAGAALIGGETAEMPGMYGEDDYDLAGFAVGVAEKSQIIDGSKVVEGDVLLGLASSGIHSNGYSLVRRVFADYTGEEVLPELEGKKLKEVLLEPTRIYVKAVLPLIKEELVNGIAHITGGGFIENVPRMFADDLAAEIDESKVPVLPIFKTLEKYGQIKHEEMFEIFNMGVGLMLAVSPENVERVKELLDEAVYEIGRIVKKENESVIIK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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