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TIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 03-APR-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae D39
  • locus tag: pDP1_p2 [new locus tag: HKJ06_RS00010 ]
  • pan locus tag?:
  • symbol: pDP1_p2
  • pan gene symbol?: —
  • synonym:
  • product: unknown

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: pDP1_p2 [new locus tag: HKJ06_RS00010 ]
  • symbol: pDP1_p2
  • product: unknown
  • replicon: pDP1
  • strand: +
  • coordinates: 1880..2209
  • length: 330
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AF047696 (1880..2209) NCBI
  • BioCyc:
  • MicrobesOnline: 2016962 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGAGTATTTCATTTAGAACAAATACATCGATGATGAACATTGCTTACAAGAATAGAGAT
    TTGAGTGATGAAGAATTTAAAGAAGAAGCTCATCAGTTTAGAGATAAAGAGATAAAAATA
    CTCGAAGAAAAATTAAAGGAACTTAATATTTCTTGTAAGGTTGTTGGAATAAATAGTATA
    AAAGATATGAACGAGTATAAAGAGATTATGGAAAATGTTAATCAAGCAAAAGAGGAATTA
    AAGAGAATAGATGAATTAATAGCCGTCAGGAGCTCCAGAATTGATTTTTTAGAGGATAAA
    ACCCTTAGAATTACAGGAAACCAAAGATGA
    60
    120
    180
    240
    300
    330

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: pDP1_p2 [new locus tag: HKJ06_RS00010 ]
  • symbol: pDP1_p2
  • description: unknown
  • length: 109
  • theoretical pI: 5.34532
  • theoretical MW: 12929.7
  • GRAVY: -0.788991

⊟Function[edit | edit source]

  • TIGRFAM:
    molybdenum cofactor synthesis domain (TIGR00177; HMM-score: 12.2)
  • TheSEED:
  • PFAM:
    no clan defined Styelin; Styelin (PF17562; HMM-score: 17.5)
    SPFH (CL0433) Band_7; SPFH domain / Band 7 family (PF01145; HMM-score: 14.6)
    and 4 more
    no clan defined DUF769; Xylella fastidiosa protein of unknown function (DUF769) (PF05590; HMM-score: 11.7)
    DPM3; Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) (PF08285; HMM-score: 11.7)
    DUF4140; N-terminal domain of unknown function (DUF4140) (PF13600; HMM-score: 11.7)
    Halogen_Hydrol; 5-bromo-4-chloroindolyl phosphate hydrolysis protein (PF10112; HMM-score: 11.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0678
    • Cytoplasmic Membrane Score: 0.0013
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.9309
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003327
    • TAT(Tat/SPI): 0.000442
    • LIPO(Sec/SPII): 0.000509
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: AAD12156 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSISFRTNTSMMNIAYKNRDLSDEEFKEEAHQFRDKEIKILEEKLKELNISCKVVGINSIKDMNEYKEIMENVNQAKEELKRIDELIAVRSSRIDFLEDKTLRITGNQR

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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