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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 30-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae R6
- locus tag: spr0123 [new locus tag: SPR_RS00675 ]
- pan locus tag?: PNEUPAN000795000
- symbol: spr0123
- pan gene symbol?: —
- synonym:
- product: Conserved hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: spr0123 [new locus tag: SPR_RS00675 ]
- symbol: spr0123
- product: Conserved hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 131851..132333
- length: 483
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE007317 (131851..132333) NCBI
- BioCyc: SPR0123 BioCyc
- MicrobesOnline: 133008 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0128 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481TTGTGTCGTTTAAGGGAAAGGACAAGAATGACTCAACAAGACTTTCGGACAAAAGTAGAC
AATACGGTTTTTGGTGTTCGGGCGACAGCCTTGATTGTCCAAAATCACAAGCTTCTAGTT
ACCAAAGACAAGGGCAAGTATTACACTATTGGAGGTGCGATTCAAGTTAACGAAAAAACG
GAAGACGCGGTAGTCCGTGAAGTGAGGGAAGAACTGGGTGTTAAAGCTCAAGCTGGGCAG
CTAGCTTTTGTGGTTGAAAATCGTTTTGAAGTGGACGGCGTTTCCTATCACAATATCGAG
TTTCATTATCTGGTGGATTTGCTTGAAGATGCCCCGTTGACCATGCAGGAAGATGAGAAA
AGTCAGCCCTGTGAGTGGATTGACTTGGATAAGCTTGAGGATATCCAGCTAGTTCCAGCC
TTTTTAAAAACAGCCCTACCAGATTGGGAAGGCCAACTAAGACACATTCATCTTGAGGAA
TAG60
120
180
240
300
360
420
480
483
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: spr0123 [new locus tag: SPR_RS00675 ]
- symbol: spr0123
- description: Conserved hypothetical protein
- length: 160
- theoretical pI: 4.81549
- theoretical MW: 18525.9
- GRAVY: -0.44
⊟Function[edit | edit source]
- TIGRFAM: DNA metabolism DNA replication, recombination, and repair mutator mutT protein (TIGR00586; EC 3.6.1.-; HMM-score: 33)and 2 moreDNA metabolism DNA replication, recombination, and repair nucleoside triphosphatase YtkD (TIGR02705; EC 3.6.1.-; HMM-score: 21)CRISPR type I-A/APERN-associated protein Csa5 (TIGR01878; HMM-score: 14.4)
- TheSEED :
- MutT/nudix family protein
- PFAM: NUDIX (CL0261) NUDIX; NUDIX domain (PF00293; HMM-score: 47.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9858
- Cytoplasmic Membrane Score: 0.0016
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0125
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004076
- TAT(Tat/SPI): 0.000503
- LIPO(Sec/SPII): 0.000851
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MCRLRERTRMTQQDFRTKVDNTVFGVRATALIVQNHKLLVTKDKGKYYTIGGAIQVNEKTEDAVVREVREELGVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKSQPCEWIDLDKLEDIQLVPAFLKTALPDWEGQLRHIHLEE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0128 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.