From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: spr0319 [new locus tag: SPR_RS01655 ]
  • pan locus tag?: PNEUPAN001173000
  • symbol: cps2P
  • pan gene symbol?: cps2P
  • synonym:
  • product: The type 2 capsule locus of Streptococcus pneumoniae

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: spr0319 [new locus tag: SPR_RS01655 ]
  • symbol: cps2P
  • product: The type 2 capsule locus of Streptococcus pneumoniae
  • replicon: chromosome
  • strand: +
  • coordinates: 319581..320186
  • length: 606
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    TTGTTAGAAGCGGTCCATACTGAGAAGCAATGGGAACGCTCAGCGACAGAACTTCCTCCA
    TTTATCATTAAACGCCTTCCAGTTCGTTTAACCTTTGATAATAACTATTTTAACGACCGT
    TATCAAGTGATTCCTATTGGTGGATACAATGTGATTATTGAAAATATACTTAAAGACGTA
    GAAGTTGGGCTAGGAGTGGATTGCTTTGACTATCGTGAAGAGCTGGAAGCATCTGCTAAC
    AAAGTTGCTTTTACAGGAATGATTGACCAGTATTTTGATTATAAGCATGGTGAGCTAGAG
    TATCGCAGTTTACGTTTTAAGCACGAAGTGCTTGATGAGGAAAATCACCAAGGAAATGCT
    GTAGTGAACTATACAGATCGTGAGATTCCTTATACTCGTATCATTGAGCATAAAAAATTT
    GAGTATGGTCTGCAGCCTAAGACAGTCATAACGCATGAATATCCAGCTGACTGGAAACGT
    GGAGATGAACCATATTATCCAATTAATGATGAGAAAAATAATGCTATCTTTTCTAAATAC
    CACGAAGAAGCTTCACAGAATGATAAGGTTATCTTCTGTGGACGTTTAGCAGATTATAAA
    TATTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    606

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: spr0319 [new locus tag: SPR_RS01655 ]
  • symbol: Cps2P
  • description: The type 2 capsule locus of Streptococcus pneumoniae
  • length: 201
  • theoretical pI: 4.9175
  • theoretical MW: 23861.5
  • GRAVY: -0.731841

⊟Function[edit | edit source]

  • TIGRFAM:
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides UDP-galactopyranose mutase (TIGR00031; EC 5.4.99.9; HMM-score: 224.2)
  • TheSEED  :
    • UDP-galactopyranose mutase (EC 5.4.99.9)
  • PFAM:
    NADP_Rossmann (CL0063) GLF; UDP-galactopyranose mutase (PF03275; HMM-score: 260.2)
    and 1 more
    TPR (CL0020) PPR_2; PPR repeat family (PF13041; HMM-score: 13.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.6762
    • Cytoplasmic Membrane Score: 0.061
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.2624
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002531
    • TAT(Tat/SPI): 0.000097
    • LIPO(Sec/SPII): 0.00037
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLEAVHTEKQWERSATELPPFIIKRLPVRLTFDNNYFNDRYQVIPIGGYNVIIENILKDVEVGLGVDCFDYREELEASANKVAFTGMIDQYFDYKHGELEYRSLRFKHEVLDEENHQGNAVVNYTDREIPYTRIIEHKKFEYGLQPKTVITHEYPADWKRGDEPYYPINDEKNNAIFSKYHEEASQNDKVIFCGRLADYKY

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=spr0319&oldid=128972"