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serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: spr0609 [new locus tag: SPR_RS03080 ]
  • pan locus tag?: PNEUPAN001608000
  • symbol: spr0609
  • pan gene symbol?: ABC-NBD-truncation_2
  • synonym:
  • product: ABC transporter ATP-binding protein - unknown substrate, truncation

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: spr0609 [new locus tag: SPR_RS03080 ]
  • symbol: spr0609
  • product: ABC transporter ATP-binding protein - unknown substrate, truncation
  • replicon: chromosome
  • strand: +
  • coordinates: 622097..622222
  • length: 126
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    ATGTTAAGTAAAAATGTAGAATATAAAGGAGGTGCAATGAGTATGATTGAAGTTAGCCAT
    TTATCAAAAAGTTTTGGTGATAAAATAGCTTTAAATAATATAAGCTTCACTGTTAAAGAA
    GGTTAG
    60
    120
    126

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: spr0609 [new locus tag: SPR_RS03080 ]
  • symbol: spr0609
  • description: ABC transporter ATP-binding protein - unknown substrate, truncation
  • length: 41
  • theoretical pI: 9.16368
  • theoretical MW: 4462.15
  • GRAVY: -0.0780488

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 19)
    Metabolism Transport and binding proteins Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 19)
    gliding motility-associated ABC transporter ATP-binding subunit GldA (TIGR03522; HMM-score: 16)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system (TIGR03864; HMM-score: 15.6)
    and 4 more
    ATP-binding cassette protein, ChvD family (TIGR03719; HMM-score: 14.1)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, ATP-binding protein (TIGR00968; EC 3.6.3.25; HMM-score: 13.9)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, ATP-binding protein (TIGR02315; EC 3.6.3.28; HMM-score: 12.7)
    Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TIGR03265; HMM-score: 11.3)
  • TheSEED  :
    • hypothetical protein
    Membrane Transport ABC transporters ABC transporter branched-chain amino acid (TC 3.A.1.4.1)  Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)
  • PFAM:

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.7768
    • Cytoplasmic Membrane Score: 0.118
    • Cell wall & surface Score: 0.0007
    • Extracellular Score: 0.1045
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.143383
    • TAT(Tat/SPI): 0.0055
    • LIPO(Sec/SPII): 0.014475
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLSKNVEYKGGAMSMIEVSHLSKSFGDKIALNNISFTVKEG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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