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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 30-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae R6
- locus tag: spr0839 [new locus tag: SPR_RS04210 ]
- pan locus tag?: PNEUPAN001920000
- symbol: spr0839
- pan gene symbol?: —
- synonym:
- product: Conserved hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: spr0839 [new locus tag: SPR_RS04210 ]
- symbol: spr0839
- product: Conserved hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 839217..839762
- length: 546
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE007317 (839217..839762) NCBI
- BioCyc: SPR0839 BioCyc
- MicrobesOnline: 133724 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0829 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541TTGATAAATCAGAAAGAAGGTGATTTTTTGCGAACATACGAAAATAAAGAAGAACTAAAA
GCTGAGATAGAGAAAACATTTGAGAAATATATTTTAGAATTTGATAATATTCCAGAAAAT
TTAAAAGATAAGAGAGCTGATGAAGTTGACAGAACTCCAGCAGAAAACCTTGCTTATCAG
GTTGGTTGGACCAACTTGGTTCTTAAATGGGAAGAAGATGAAAGAAAGGGGCTTCAAGTA
AAAACACCATCGGATAAATTTAAATGGAATCAACTTGGTGAATTATATCAGTGGTTCACA
GATACCTACGCTCATTTATCTCTGCAAGAGTTGAAAGCAAAATTAAATGAAAATATTAAT
TCTATCTCTGCAATGATTGATTCGTTGAGTGAGGAAGAATTATTTGAACCGCATATGAGA
AAGTGGGCTGATGAAGCGACTAAAACAGCGACTTGGGAAGTGTATAAGTTTATTCATGTA
AATACGGTTGCACCTTTTGGAACTTTCAGAACTAAAATCAGAAAATGGAAGAAGATAGTA
TTATAA60
120
180
240
300
360
420
480
540
546
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: spr0839 [new locus tag: SPR_RS04210 ]
- symbol: spr0839
- description: Conserved hypothetical protein
- length: 181
- theoretical pI: 5.21013
- theoretical MW: 21597.3
- GRAVY: -0.785083
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- DUF1706 domain-containing protein
- PFAM: DinB (CL0310) DUF1706; Protein of unknown function (DUF1706) (PF08020; HMM-score: 189.1)and 4 moreno clan defined UBN_AB; Ubinuclein conserved middle domain (PF14075; HMM-score: 20.3)PDDEXK (CL0236) RE_MjaI; MjaI restriction endonuclease (PF09568; HMM-score: 16.3)DinB (CL0310) DinB_2; DinB superfamily (PF12867; HMM-score: 15.7)P-loop_NTPase (CL0023) UvrD_C; UvrD-like helicase C-terminal domain (PF13361; HMM-score: 15.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.924
- Cytoplasmic Membrane Score: 0.05
- Cell wall & surface Score: 0.0011
- Extracellular Score: 0.0248
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004647
- TAT(Tat/SPI): 0.000342
- LIPO(Sec/SPII): 0.001049
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MINQKEGDFLRTYENKEELKAEIEKTFEKYILEFDNIPENLKDKRADEVDRTPAENLAYQVGWTNLVLKWEEDERKGLQVKTPSDKFKWNQLGELYQWFTDTYAHLSLQELKAKLNENINSISAMIDSLSEEELFEPHMRKWADEATKTATWEVYKFIHVNTVAPFGTFRTKIRKWKKIVL
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0829 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]