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TIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: spr0958
  • pan locus tag?:
  • symbol: spr0958
  • pan gene symbol?: —
  • synonym:
  • product: Tn5252, relaxase, truncation

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: spr0958
  • symbol: spr0958
  • product: Tn5252, relaxase, truncation
  • replicon: chromosome
  • strand: +
  • coordinates: 939505..940062
  • length: 558
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AE007317 (939505..940062) NCBI
  • BioCyc:
  • MicrobesOnline: 133843 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    TTGCATGTTCAGATTGATTTTAGTCAAAAGCATAGTCGATTCATGATGACGGATCGAGCA
    ATGACAAAACCTATTCGAGGACGCCAACTCAGCAAACGAGATCTATATGATGAAGAATTT
    TTTAGAACGCATTTTGCTAAGCAAGAGATTGAAAGTCGTTTAGAATTTTTGTTGAACCGT
    GTCAATTCTTTAGAAGAGTTAATAACAAAAGCAAAAGAATTGAATCTAACCATTGACTTA
    AAACAAAAAAATGTAACTTTTATCCTGAAAGAAAATAATCAAAAGATAAGTTTGGGTCAT
    CAAAAAATAAGTGATAAGAAATTATATGATGTCAAATTTTTTCAAGATTATTTTAAAAAT
    AAGGAAGTCATTGCTTCAGAAGGATTAGAGAATTTACAGGAACAGTACCATGCTTTCCAA
    GAAGAACGAGATAAGGATAAAGTATCCACTGAAGAGATTGAGGAAGCCTTTAAGACATTT
    AAGAAGCCTTTAAGACATTTAAGGAAAAATGAGATACCGTTCGTGAATTTGAAGTGGAAC
    TTGCAGAGAACCAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    558

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: spr0958
  • symbol: spr0958
  • description: Tn5252, relaxase, truncation
  • length: 185
  • theoretical pI: 9.99418
  • theoretical MW: 22412.5
  • GRAVY: -0.914595

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Tn5252, relaxase
  • PFAM:
    Rep (CL0169) Relaxase; Relaxase/Mobilisation nuclease domain (PF03432; HMM-score: 18.9)
    Tudor (CL0049) PWWP; PWWP domain (PF00855; HMM-score: 16.9)
    and 3 more
    no clan defined Phage_GPO; Phage capsid scaffolding protein (GPO) serine peptidase (PF05929; HMM-score: 10.9)
    Occludin_ELL; Occludin homology domain (PF07303; HMM-score: 10)
    zf-DNA_Pol; DNA Polymerase alpha zinc finger (PF08996; HMM-score: 9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002516
    • TAT(Tat/SPI): 0.00034
    • LIPO(Sec/SPII): 0.001487
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MHVQIDFSQKHSRFMMTDRAMTKPIRGRQLSKRDLYDEEFFRTHFAKQEIESRLEFLLNRVNSLEELITKAKELNLTIDLKQKNVTFILKENNQKISLGHQKISDKKLYDVKFFQDYFKNKEVIASEGLENLQEQYHAFQEERDKDKVSTEEIEEAFKTFKKPLRHLRKNEIPFVNLKWNLQRTK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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